Strain identifier

BacDive ID: 498

Type strain: Yes

Species: Aliagarivorans marinus

Strain Designation: AAM1

Strain history: DSM 23064 <-- W. Y. Shieh, Inst. of Oceanogr., Natl. Taiwan Univ., Taiwan; AAM1 <-- W. D. Jean, Leader Univ., Taiwan.

NCBI tax ID(s): 1120969 (strain), 561965 (species)

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General

@ref: 16685

BacDive-ID: 498

DSM-Number: 23064

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative, motile, rod-shaped

description: Aliagarivorans marinus AAM1 is an anaerobe, Gram-negative, motile bacterium that was isolated from seawater sample.

NCBI tax id

NCBI tax idMatching level
1120969strain
561965species

strain history

@refhistory
16685<- W. Y. Shieh, Natl. Taiwan Univ., Inst. Oceanography, Taipei; AAM1 <- W. D. Jean, Leader Univ., Tainan, Taiwan
67770DSM 23064 <-- W. Y. Shieh, Inst. of Oceanogr., Natl. Taiwan Univ., Taiwan; AAM1 <-- W. D. Jean, Leader Univ., Taiwan.

doi: 10.13145/bacdive498.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Aliagarivorans
  • species: Aliagarivorans marinus
  • full scientific name: Aliagarivorans marinus Jean et al. 2009

@ref: 16685

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Aliagarivorans

species: Aliagarivorans marinus

full scientific name: Aliagarivorans marinus Jean et al. 2009

strain designation: AAM1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29188negative1.7 µm1.1 µmrod-shapedyes
69480negative99.5

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_23064_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_23064_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_23064_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_23064_4.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 16685
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
16685positivegrowth28
29188positivegrowth15-37
29188positiveoptimum27.5
67770positivegrowth25

culture pH

@refabilitytypepHPH range
29188positivegrowth7.0-9.0alkaliphile
29188positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 29188
  • oxygen tolerance: anaerobe

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

halophily

@refsaltgrowthtested relationconcentration
29188NaClpositivegrowth1.0-7.0 %
29188NaClpositiveoptimum3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2918830089acetate+carbon source
2918816449alanine+carbon source
2918822599arabinose+carbon source
2918835391aspartate+carbon source
2918817057cellobiose+carbon source
2918828757fructose+carbon source
2918828260galactose+carbon source
2918817234glucose+carbon source
2918829987glutamate+carbon source
2918817716lactose+carbon source
2918817306maltose+carbon source
2918829864mannitol+carbon source
2918837684mannose+carbon source
2918828053melibiose+carbon source
2918815361pyruvate+carbon source
2918816634raffinose+carbon source
2918830911sorbitol+carbon source
2918817992sucrose+carbon source
2918827082trehalose+carbon source
2918818222xylose+carbon source
2918817632nitrate+reduction

enzymes

  • @ref: 29188
  • value: gelatinase
  • activity: +

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16685seawater sampleTainan, An-Ping Harbour (shallow coastal region)Taiwan, Province of ChinaTWNAsia
67770Shallow coastal water from An-Ping HarbourTainanTaiwan, Province of ChinaTWNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_51853.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_361;96_23320;97_29169;98_37216;99_51853&stattab=map
  • Last taxonomy: Aliagarivorans marinus
  • 16S sequence: FJ167390
  • Sequence Identity:
  • Total samples: 231
  • soil counts: 1
  • aquatic counts: 183
  • animal counts: 47

Safety information

risk assessment

  • @ref: 16685
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16685
  • description: Aliagarivorans marinus strain AAM1 16S ribosomal RNA gene, partial sequence
  • accession: FJ167390
  • length: 1461
  • database: nuccore
  • NCBI tax ID: 561965

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aliagarivorans marinus DSM 230641120969.3wgspatric1120969
66792Aliagarivorans marinus DSM 230642523533543draftimg1120969
67770Aliagarivorans marinus DSM 23064GCA_000429485scaffoldncbi1120969

GC content

@refGC-contentmethod
1668552.9
6777052.9high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no82.854no
69480spore-formingspore-formingAbility to form endo- or exosporesno87.918no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no58.003yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98.375yes
69480flagellatedmotile2+Ability to perform flagellated movementyes81.093no

External links

@ref: 16685

culture collection no.: DSM 23064, BCRC 17888, JCM 15522, JCM 31907

straininfo link

  • @ref: 70177
  • straininfo: 401158

literature

  • topic: Phylogeny
  • Pubmed-ID: 19567569
  • title: Aliagarivorans marinus gen. nov., sp. nov. and Aliagarivorans taiwanensis sp. nov., facultatively anaerobic marine bacteria capable of agar degradation.
  • authors: Jean WD, Huang SP, Liu TY, Chen JS, Shieh WY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.008235-0
  • year: 2009
  • mesh: Agar/*metabolism, Alteromonadaceae/*classification/genetics/isolation & purification/*metabolism, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Taiwan, Temperature
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16685Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23064)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23064
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29188Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2561228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life28604660 35: 676-683 2017
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70177Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401158.1StrainInfo: A central database for resolving microbial strain identifiers