Strain identifier

BacDive ID: 444

Type strain: Yes

Species: Alteromonas macleodii

Strain Designation: 107

Strain history: CIP <- 1988, NCIB <- 1973, ATCC <- P. Baumann: strain 107

NCBI tax ID(s): 529120 (strain), 28108 (species)

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General

@ref: 2425

BacDive-ID: 444

DSM-Number: 6062

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Alteromonas macleodii 107 is an aerobe, mesophilic, motile bacterium that was isolated from seawater.

NCBI tax id

NCBI tax idMatching level
529120strain
28108species

strain history

@refhistory
2425<- ATCC <- P. Baumann, 107
67770IAM 12920 <-- ATCC 27126 <-- P. Baumann 107.
120737CIP <- 1988, NCIB <- 1973, ATCC <- P. Baumann: strain 107

doi: 10.13145/bacdive444.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Alteromonas
  • species: Alteromonas macleodii
  • full scientific name: Alteromonas macleodii Baumann et al. 1972 (Approved Lists 1980)

@ref: 2425

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Alteromonas

species: Alteromonas macleodii

full scientific name: Alteromonas macleodii Baumann et al. 1972 emend. Yi et al. 2004 emend. Vandecandelaere et al. 2008

strain designation: 107

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.165
6948099.996negative
120737yesnegativerod-shaped

colony morphology

  • @ref: 46448
  • incubation period: 2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2425BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40559Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120737CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
2425positivegrowth26mesophilic
40559positivegrowth25mesophilic
46448positivegrowth20-30
67770positivegrowth25mesophilic
120737positivegrowth10-41
120737nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46448
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.967

halophily

@refsaltgrowthtested relationconcentration
120737NaClpositivegrowth2-10 %
120737NaClnogrowth0 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371xylitol-builds acid from17151
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371esculin+builds acid from4853
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68369malate-assimilation25115
68369adipate-assimilation17128
68369decanoate-assimilation27689
68369gluconate-assimilation24265
68369maltose-assimilation17306
68369N-acetylglucosamine-assimilation59640
68369D-mannitol-assimilation16899
68369D-mannose-assimilation16024
68369L-arabinose-assimilation30849
68369D-glucose-assimilation17634
68369gelatin+hydrolysis5291
68369esculin-hydrolysis4853
68369urea-hydrolysis16199
68369arginine-hydrolysis29016
68369D-glucose-fermentation17634
68369tryptophan-energy source27897
68369nitrate-reduction17632
120737nitrate-reduction17632
120737nitrite-reduction16301

antibiotic resistance

  • @ref: 120737
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12073735581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12073715688acetoin-
12073717234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
120737oxidase+
120737beta-galactosidase+3.2.1.23
120737alcohol dehydrogenase-1.1.1.1
120737gelatinase+
120737amylase+
120737DNase+
120737caseinase+3.4.21.50
120737catalase+1.11.1.6
120737tween esterase+
120737lecithinase-
120737lipase-
120737lysine decarboxylase-4.1.1.18
120737ornithine decarboxylase-4.1.1.17
120737phenylalanine ammonia-lyase+4.3.1.24
120737protease-
120737tryptophan deaminase-
120737urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46448-+-+-++---+---------
120737-++++++---++---++---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
46448------++------------+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120737-----+/----+/-+/-+/------+/---+/---+/-++/-+/-+/-+/-+/-+/-+/-----+/--+/-+/--------+/--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120737++++--++-+++++-++++--++--+-----+-+++-------------------+---++--------------+------------+-+--++-+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
2425seawater
46448Seawatercoast of Oahu,HawaiiUSAUSANorth America
67770SeawaterHIUSAUSANorth America
120737Environment, Sea waterOahu, HawaiiUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_508.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_261;97_285;98_318;99_508&stattab=map
  • Last taxonomy: Alteromonas
  • 16S sequence: Y18228
  • Sequence Identity:
  • Total samples: 5812
  • soil counts: 47
  • aquatic counts: 5573
  • animal counts: 164
  • plant counts: 28

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
24251Risk group (German classification)
1207371Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Alteromonas macleodii strain ATCC 27126 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY831613275ena529120
20218Alteromonas macleodii strain ATCC 27126 16S ribosomal RNA gene, partial sequenceAY831617433ena529120
20218Alteromonas macleodii clone MACLE1 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF408818691ena28108
20218Alteromonas sp. CFW-5 16S ribosomal RNA, partial sequenceAF123063160ena93658
20218Alteromonas sp. CFS-3 16S ribosomal RNA, partial sequenceAF123068160ena93664
20218A.macleodii 16S rRNA gene (IAM 12920T)X821451432ena28108
20218Alteromonas macleodii gene for 16S rRNA, partial sequence, strain: NBRC 102226AB6817401458ena28108
2425Alteromonas macleodii 16S rRNA gene, strain DSM 6062, partialY182281492ena28108

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alteromonas macleodii ATCC 27126GCA_000172635completencbi529120
66792Alteromonas macleodii ATCC 27126529120.14completepatric529120
66792Alteromonas macleodii ATCC 271262554235747completeimg529120

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.734no
flagellatedyes92.283no
gram-positiveno98.872no
anaerobicno98.009no
aerobicyes93.875yes
halophileyes64.578no
spore-formingno97.119no
thermophileno99.743yes
glucose-utilyes86.535yes
glucose-fermentno87.37yes

External links

@ref: 2425

culture collection no.: DSM 6062, ATCC 27126, CCUG 16128, CIP 103198, JCM 20772, LMG 2843, NBRC 102226, IAM 12920, NCIMB 1963

straininfo link

  • @ref: 70123
  • straininfo: 870

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny13130060Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea.Yoon JH, Kim IG, Kang KH, Oh TK, Park YHInt J Syst Evol Microbiol10.1099/ijs.0.02536-02003Alteromonas/*classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Phenotype, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiologyGenetics
Genetics18670397Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter.Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodriguez-Valera FISME J10.1038/ismej.2008.742008Alteromonas/*genetics/isolation & purification/metabolism, *Ecosystem, Genome, Bacterial, *Genomics, Mediterranean Sea, Molecular Sequence Data, Organic Chemicals/*metabolism, Phylogeny, Plankton/*genetics/metabolism, Seawater/*microbiologyPhylogeny
Genetics22563400Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism.Math RK, Jin HM, Kim JM, Hahn Y, Park W, Madsen EL, Jeon COPLoS One10.1371/journal.pone.00357842012Alteromonas/*genetics/isolation & purification, Cold Temperature, Databases, Genetic, Genome, Bacterial, *Genomics, Geologic Sediments/microbiology, Hydrocarbons, Aromatic/*metabolism, Molecular Chaperones/genetics/metabolism, Molecular Sequence Data, Multigene Family, RNA, Transfer/genetics/metabolism, RNA, Untranslated/genetics/metabolism, Signal Transduction/geneticsMetabolism
Genetics23209244Complete genome sequence of the copiotrophic marine bacterium Alteromonas macleodii strain ATCC 27126T.Gonzaga A, Lopez-Perez M, Martin-Cuadrado AB, Ghai R, Rodriguez-Valera FJ Bacteriol10.1128/JB.01565-122012Alteromonas/*genetics, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, Seawater/microbiology, Sequence Analysis, DNAPhylogeny
Enzymology24262656Gene cloning and characterization of an alpha-amylase from Alteromonas macleodii B7 for Enteromorpha polysaccharide degradation.Han X, Lin B, Ru G, Zhang Z, Liu Y, Hu ZJ Microbiol Biotechnol10.4014/jmb.1304.040362014Alteromonas/*enzymology/genetics/isolation & purification, Amino Acid Sequence, Chlorophyta/chemistry, Cloning, Molecular, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Enzyme Activators/metabolism, Enzyme Stability, Escherichia coli/genetics, Gene Expression, Hydrogen-Ion Concentration, Hydrolysis, Molecular Sequence Data, Phylogeny, Polysaccharides/*metabolism, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ulva/microbiology, alpha-Amylases/chemistry/genetics/isolation & purification/*metabolismMetabolism
Phylogeny25326795Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp. nov.Ivanova EP, Lopez-Perez M, Zabalos M, Nguyen SH, Webb HK, Ryan J, Lagutin K, Vyssotski M, Crawford RJ, Rodriguez-Valera FAntonie Van Leeuwenhoek10.1007/s10482-014-0309-y2014Alteromonas/*classification/genetics/*physiology, Atlantic Ocean, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genome, Bacterial, Locomotion, Mediterranean Sea, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Sodium Chloride/toxicityGenetics
Phylogeny25701844Alteromonas gracilis sp. nov., a marine polysaccharide-producing bacterium.Matsuyama H, Minami H, Sakaki T, Kasahara H, Baba S, Ishimaru S, Hirota K, Yumoto IInt J Syst Evol Microbiol10.1099/ijs.0.0001272015Alteromonas/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, Polysaccharides, Bacterial, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny29349565Description of Alteromonas abrolhosensis sp. nov., isolated from sea water of Abrolhos Bank, Brazil.Nobrega MS, Silva BS, Leomil L, Tschoeke DA, Campeao ME, Garcia GD, Dias GA, Vieira VV, Thompson CC, Thompson FLAntonie Van Leeuwenhoek10.1007/s10482-018-1016-x2018Alteromonas/classification/genetics/*isolation & purification, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, Brazil, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyEnzymology
Phylogeny31935177Alteromonas portus sp. nov., an alginate lyase-excreting marine bacterium.Huang H, Mo K, Li S, Dongmei S, Zhu J, Zou X, Hu Y, Bao SInt J Syst Evol Microbiol10.1099/ijsem.0.0038842020Alteromonas/*classification/enzymology/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, *Polysaccharide-Lyases, RNA, Ribosomal, 16S/genetics, Sand/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryEnzymology
32345736Transcriptomic Study of Substrate-Specific Transport Mechanisms for Iron and Carbon in the Marine Copiotroph Alteromonas macleodii.Manck LE, Espinoza JL, Dupont CL, Barbeau KAmSystems10.1128/mSystems.00070-202020
Metabolism34341506Petrobactin, a siderophore produced by Alteromonas, mediates community iron acquisition in the global ocean.Manck LE, Park J, Tully BJ, Poire AM, Bundy RM, Dupont CL, Barbeau KAISME J10.1038/s41396-021-01065-y2021*Alteromonas/metabolism, Benzamides, Iron/metabolism, Oceans and Seas, *Siderophores/metabolism
Pathogenicity35862972A Novel Alteromonas Phage Lineage with a Broad Host Range and Small Burst Size.Yang Y, Ma R, Yu C, Ye J, Chen X, Wang L, Jiao N, Zhang RMicrobiol Spectr10.1128/spectrum.01499-222022*Alteromonas/genetics, *Bacteriophages/genetics, Ecosystem, Genome, Viral, Host Specificity, PhylogenyGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2425Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6062)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6062
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40559Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14969
46448Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 16128)https://www.ccug.se/strain?id=16128
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70123Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID870.1StrainInfo: A central database for resolving microbial strain identifiers
120737Curators of the CIPCollection of Institut Pasteur (CIP 103198)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103198