Name: Alteromonas macleodii 107
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 444

Type strain:

Species: Alteromonas macleodii

Strain Designation: 107

Culture col. no.: DSM 6062, ATCC 27126, CCUG 16128, CIP 103198, JCM 20772, LMG 2843, NBRC 102226, IAM 12920, NCIMB 1963

Strain history: IAM 12920 <-- ATCC 27126 <-- P. Baumann 107.

NCBI tax ID(s): 529120 (strain), 28108 (species)

Other strains from Alteromonas macleodii

A. macleodii AMUM8, AMISUM8, Ionian Sea UM8, ...
A. macleodii AMBLS11, Black Sea 11, BS11, DSM ...
A. macleodii AD45, AMBAS45, Balearic Sea AD45, ...
A. macleodii AMU12, AMISU12, Ionian Sea U12, ...
A. macleodii AMBLS7, Black Sea 7, BS7, DSM 26498
A. macleodii AMBLS8, Black Sea 8, BS8, DSM 26500
A. macleodii AMBLSH84-3, Black Sea H84-3, DSM ...
A. macleodii AMBLSH94-8, Black Sea H94-8, DSM ...
A. macleodii AM673, AMEC673, English Channel ...
A. macleodii AMAND7, Andaman Sea 7, DSM 26505
A. macleodii AD006, DSM 100460
A. macleodii AD037, DSM 100461

Section

Alteromonas macleodii 107 is an aerobe, mesophilic bacterium that was isolated from seawater.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Alteromonas*
	Species	**Alteromonas macleodii**
	Full Scientific Name (PNU)	Alteromonas macleodii Baumann et al. 1972 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #69480]	Motility	yes Confidence in %97.165

[Ref.: #46448]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2425]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #2425]

Culture medium growth

[Ref.: #2425]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2425]

Culture medium composition

expand / minimize

[Ref.: #40559]

Culture medium

Marine agar (MA)

[Ref.: #40559]

Culture medium growth

[Ref.: #40559]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2425]	growth	26 °C
[Ref.: #40559]	growth	25 °C
[Ref.: #46448]	growth	20-30 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #2425]	Temperature range	mesophilic
[Ref.: #40559]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46448]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.967

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #46448]	7297	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #46448]	3656	-	+	-	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2425]	Sample type/isolated from	seawater

[Ref.: #46448]	Sample type/isolated from	Seawater
[Ref.: #46448]	Geographic location (country and/or sea, region)	coast of Oahu,Hawaii
[Ref.: #46448]	Country	USA
[Ref.: #46448]	Country ISO 3 Code	USA
[Ref.: #46448]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	HI
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y18228 (>99% sequence identity) for Alteromonas from Microbeatlas

Aquatic Samples	5573
Soil Samples	47
Animal Samples	164
Plant Samples	28
Total Samples	5812

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2425]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2425]	Alteromonas macleodii 16S rRNA gene, strain DSM 6062, partial	Y18228	1492	ENA	28108 tax ID
[Ref.: #20218]	Alteromonas macleodii strain ATCC 27126 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY831613	275	ENA	529120 tax ID	*
[Ref.: #20218]	Alteromonas macleodii strain ATCC 27126 16S ribosomal RNA gene, partial sequence	AY831617	433	ENA	529120 tax ID	*
[Ref.: #20218]	Alteromonas macleodii clone MACLE1 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF408818	691	ENA	28108 tax ID	*
[Ref.: #20218]	Alteromonas sp. CFW-5 16S ribosomal RNA, partial sequence	AF123063	160	ENA	93658 tax ID	*
[Ref.: #20218]	Alteromonas sp. CFS-3 16S ribosomal RNA, partial sequence	AF123068	160	ENA	93664 tax ID	*
[Ref.: #20218]	A.macleodii 16S rRNA gene (IAM 12920T)	X82145	1432	ENA	28108 tax ID	*
[Ref.: #20218]	Alteromonas macleodii gene for 16S rRNA, partial sequence, strain: NBRC 102226	AB681740	1458	ENA	28108 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alteromonas macleodii ATCC 27126, complete genome	CP003841		ENA	529120 tax ID
[Ref.: #66792]	Alteromonas macleodii ATCC 27126 ATCC 27126	GCA_000172635	complete	GenBank	529120 tax ID	*
[Ref.: #66792]	Alteromonas macleodii ATCC 27126	529120.14	complete	PATRIC	529120 tax ID	*
[Ref.: #66792]	Alteromonas macleodii ATCC 27126	2554235747	complete	JGI IMG/M	529120 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alteromonas macleodii ATCC 27126 PATRIC: 529120.14
[Ref.: #69480]	gram-positive	no	99.996	yes
[Ref.: #69480]	spore-forming	no	99.967	yes
[Ref.: #69480]	thermophile	no	99.826	yes
[Ref.: #69480]	anaerobic	no	99.947	no
[Ref.: #69480]	motile	yes	97.165	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alteromonas macleodii ATCC 27126 PATRIC: 529120.14
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #2425]

Culture collection no.

DSM 6062, ATCC 27126, CCUG 16128, CIP 103198, JCM 20772, LMG 2843, NBRC 102226, IAM 12920, NCIMB 1963

[Ref.: #20218]

Associated Passport(s) in StrainInfo

3554, 3550, 3552, 148539, 745708, 3549, 890335

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Petrobactin, a siderophore produced by Alteromonas, mediates community iron acquisition in the global ocean.	Manck LE, Park J, Tully BJ, Poire AM, Bundy RM, Dupont CL, Barbeau KA	ISME J	10.1038/s41396-021-01065-y	2021	*
Phylogeny	Alteromonas portus sp. nov., an alginate lyase-excreting marine bacterium.	Huang H, Mo K, Li S, Dongmei S, Zhu J, Zou X, Hu Y, Bao S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003884	2020	*
Phylogeny	Description of Alteromonas abrolhosensis sp. nov., isolated from sea water of Abrolhos Bank, Brazil.	Nobrega MS, Silva BS, Leomil L, Tschoeke DA, Campeao ME, Garcia GD, Dias GA, Vieira VV, Thompson CC, Thompson FL	Antonie Van Leeuwenhoek	10.1007/s10482-018-1016-x	2018	*
Phylogeny	Alteromonas gracilis sp. nov., a marine polysaccharide-producing bacterium.	Matsuyama H, Minami H, Sakaki T, Kasahara H, Baba S, Ishimaru S, Hirota K, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.000127	2015	*
Phylogeny	Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp. nov.	Ivanova EP, Lopez-Perez M, Zabalos M, Nguyen SH, Webb HK, Ryan J, Lagutin K, Vyssotski M, Crawford RJ, Rodriguez-Valera F	Antonie Van Leeuwenhoek	10.1007/s10482-014-0309-y	2014	*
Enzymology	Gene cloning and characterization of an alpha-amylase from Alteromonas macleodii B7 for Enteromorpha polysaccharide degradation.	Han X, Lin B, Ru G, Zhang Z, Liu Y, Hu Z	J Microbiol Biotechnol	10.4014/jmb.1304.04036	2014	*
Genetics	Complete genome sequence of the copiotrophic marine bacterium Alteromonas macleodii strain ATCC 27126T.	Gonzaga A, Lopez-Perez M, Martin-Cuadrado AB, Ghai R, Rodriguez-Valera F	J Bacteriol	10.1128/JB.01565-12	2012	*
Genetics	Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism.	Math RK, Jin HM, Kim JM, Hahn Y, Park W, Madsen EL, Jeon CO	PLoS One	10.1371/journal.pone.0035784	2012	*
Genetics	Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter.	Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodriguez-Valera F	ISME J	10.1038/ismej.2008.74	2008	*
Phylogeny	Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea.	Yoon JH, Kim IG, Kang KH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02536-0	2003	*
Pathogenicity	A Novel Alteromonas Phage Lineage with a Broad Host Range and Small Burst Size.	Yang Y, Ma R, Yu C, Ye J, Chen X, Wang L, Jiao N, Zhang R	Microbiol Spectr	10.1128/spectrum.01499-22	2022	*
	Transcriptomic Study of Substrate-Specific Transport Mechanisms for Iron and Carbon in the Marine Copiotroph Alteromonas macleodii.	Manck LE, Espinoza JL, Dupont CL, Barbeau KA	mSystems	10.1128/mSystems.00070-20	2020	*

References

#2425

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6062

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40559 ; Curators of the CIP;
#46448 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16128

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Alteromonas macleodii ATCC 27126

Alteromonas macleodii ATCC 27126

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