Strain identifier

BacDive ID: 4314

Type strain: Yes

Species: Buttiauxella gaviniae

Strain Designation: S1/1-984

Strain history: CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- Müller: strain S1/1-984

NCBI tax ID(s): 1354253 (strain), 82990 (species)

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General

@ref: 3469

BacDive-ID: 4314

DSM-Number: 9393

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Buttiauxella gaviniae S1/1-984 is an aerobe, mesophilic, motile bacterium that was isolated from snail.

NCBI tax id

NCBI tax idMatching level
82990species
1354253strain

strain history

@refhistory
3469<- H. E. Müller; S1/1-984
119558CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- Müller: strain S1/1-984

doi: 10.13145/bacdive4314.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Buttiauxella
  • species: Buttiauxella gaviniae
  • full scientific name: Buttiauxella gaviniae Müller et al. 1996

@ref: 3469

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Buttiauxella

species: Buttiauxella gaviniae

full scientific name: Buttiauxella gaviniae Müller et al. 1996

strain designation: S1/1-984

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.54
6948099.991negative
119558yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3469CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
119558CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
119558CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
3469positivegrowth28mesophilic
52778positivegrowth30mesophilic
119558positivegrowth5-37
119558nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
52778aerobe
119558facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.742

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11955829864mannitol+fermentation
11955816947citrate+carbon source
11955817234glucose+fermentation
11955817716lactose-fermentation
11955817632nitrate+reduction
11955816301nitrite-reduction
11955815792malonate-assimilation
119558132112sodium thiosulfate-builds gas from
11955817234glucose+degradation

antibiotic resistance

  • @ref: 119558
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 119558
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11955815688acetoin-
11955817234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
119558oxidase-
119558beta-galactosidase+3.2.1.23
119558alcohol dehydrogenase-1.1.1.1
119558gelatinase-
119558catalase+1.11.1.6
119558lysine decarboxylase-4.1.1.18
119558ornithine decarboxylase-4.1.1.17
119558phenylalanine ammonia-lyase-4.3.1.24
119558tryptophan deaminase-
119558urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119558-+---++---++-+-+++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119558+++++----++--+----++++++--+-+--+--++-+-+--++++---++--+++++-++++++--------+-+--+++-----+--++++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3469snailBraunschweigGermanyDEUEurope
119558Animal, SnailGermanyDEUEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_2027.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_411;98_1588;99_2027&stattab=map
  • Last taxonomy: Buttiauxella
  • 16S sequence: AJ233403
  • Sequence Identity:
  • Total samples: 7158
  • soil counts: 778
  • aquatic counts: 1274
  • animal counts: 4089
  • plant counts: 1017

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
34691Risk group (German classification)
1195581Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Buttiauxella gaviniae 16S rRNA gene (strain DSM 9393)
  • accession: AJ233403
  • length: 1495
  • database: ena
  • NCBI tax ID: 82990

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Buttiauxella gaviniae ATCC 51604GCA_001654835contigncbi1354253
66792Buttiauxella gaviniae ATCC 516041354253.4wgspatric1354253
66792Buttiauxella gaviniae ATCC 516042791354933draftimg1354253

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.106no
gram-positiveno97.919no
anaerobicno96.967yes
halophileno89.534no
spore-formingno94.657no
thermophileno99.517yes
glucose-utilyes95.101no
flagellatedno56.081no
aerobicyes87.315yes
glucose-fermentyes92.368no

External links

@ref: 3469

culture collection no.: CCUG 35508, DSM 9393, ATCC 51604, CCM 4875, CIP 106356, CDC 9509-94

straininfo link

  • @ref: 73806
  • straininfo: 46913

literature

  • topic: Phylogeny
  • Pubmed-ID: 11534554
  • title: Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov.
  • authors: Muller HE, Brenner DJ, Fanning GR, Grimont PA, Kampfer P
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-46-1-50
  • year: 1996
  • mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification/metabolism, Humans, Intestines/microbiology, Mollusca/*microbiology, Nucleic Acid Hybridization, Phenotype, Snails/*microbiology, Soil Microbiology, Terminology as Topic, Water Microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3469Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9393)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9393
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
52778Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35508)https://www.ccug.se/strain?id=35508
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73806Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46913.1StrainInfo: A central database for resolving microbial strain identifiers
119558Curators of the CIPCollection of Institut Pasteur (CIP 106356)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106356