Name: Buttiauxella gaviniae S1/1-984
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4314

Type strain:

Species: Buttiauxella gaviniae

Strain Designation: S1/1-984

Culture col. no.: CCUG 35508, DSM 9393, ATCC 51604, CCM 4875, CIP 106356, CDC 9509-94

Strain history: CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- Müller: strain S1/1-984

NCBI tax ID(s): 1354253 (strain), 82990 (species)

SI-ID 46913

ATCC 51604, DSM 9393, CCUG 35508, CIP 106356, CCM 4875

Other strains from Buttiauxella gaviniae

B. gaviniae S1/17-911, DSM 9394
B. gaviniae F 47, DSM 9392, CDC 1175-81, CUETM ...
B. gaviniae EG59-like Z 2132, DSM 9395

Section

Buttiauxella gaviniae S1/1-984 is an aerobe, mesophilic, motile bacterium that was isolated from snail.

motile
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Buttiauxella*
	Species	**Buttiauxella gaviniae**
	Full Scientific Name (LPSN)	Buttiauxella gaviniae Müller et al. 1996

Information on morphological and physiological properties Morphology

[Ref.: #119558]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #119558]	Cell shape	rod-shaped

[Ref.: #119558]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.54

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3469]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #3469]

Culture medium growth

[Ref.: #3469]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3469]

Culture medium composition

expand / minimize

[Ref.: #119558]

Culture medium

CIP Medium 3

[Ref.: #119558]

Culture medium growth

[Ref.: #119558]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119558]

Culture medium

CIP Medium 72

[Ref.: #119558]

Culture medium growth

[Ref.: #119558]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3469]		growth	28 °C
[Ref.: #52778]		growth	30 °C
[Ref.: #119558]		growth	5-37 °C
[Ref.: #119558]	no	growth	41 °C

[Ref.: #3469]	Temperature range	mesophilic
[Ref.: #52778]	Temperature range	mesophilic
[Ref.: #119558]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #52778]	Oxygen tolerance	aerobe
[Ref.: #119558]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.742

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119558]	citrate ChEBI	+	carbon source
[Ref.: #119558]	glucose ChEBI	+	fermentation
[Ref.: #119558]	glucose ChEBI	+	degradation
[Ref.: #119558]	lactose ChEBI	-	fermentation
[Ref.: #119558]	malonate ChEBI	-	assimilation
[Ref.: #119558]	mannitol ChEBI	+	fermentation
[Ref.: #119558]	nitrate ChEBI	+	reduction
[Ref.: #119558]	nitrite ChEBI	-	reduction
[Ref.: #119558]	sodium thiosulfate ChEBI	-	builds gas from

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119558]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #119558]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119558]		acetoin ChEBI	-
[Ref.: #119558]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119558]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119558]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119558]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #119558]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119558]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119558]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119558]	oxidase	-
[Ref.: #119558]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119558]	tryptophan deaminase	-
[Ref.: #119558]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119558]	1656	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	-	+	-	-	-	-	+	+	+	+	+	+	-	-	+	-	+	-	-	+	-	-	+	+	-	+	-	+	-	-	+	+	+	+	-	-	-	+	+	-	-	+	+	+	+	+	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	-	+	-	-	+	+	+	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119558]	9431	-	+	-	-	-	+	+	-	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3469]	Sample type/isolated from	snail
[Ref.: #3469]	Geographic location (country and/or sea, region)	Braunschweig
[Ref.: #3469]	Country	Germany
[Ref.: #3469]	Country ISO 3 Code	DEU
[Ref.: #3469]	Continent	Europe

[Ref.: #119558]	Sample type/isolated from	Animal, Snail
[Ref.: #119558]	Country	Germany
[Ref.: #119558]	Country ISO 3 Code	DEU
[Ref.: #119558]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ233403 (>99% sequence identity) for Buttiauxella from Microbeatlas

Aquatic Samples	1274
Soil Samples	778
Animal Samples	4089
Plant Samples	1017
Total Samples	7158

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3469]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119558]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Buttiauxella gaviniae 16S rRNA gene (strain DSM 9393)	AJ233403	1495	ENA	82990 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Buttiauxella gaviniae ATCC 51604	GCA_001654835	contig	GenBank	1354253 tax ID	*
[Ref.: #66792]	Buttiauxella gaviniae ATCC 51604	1354253.4	wgs	PATRIC	1354253 tax ID	*
[Ref.: #66792]	Buttiauxella gaviniae ATCC 51604	2791354933	draft	JGI IMG/M	1354253 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Buttiauxella gaviniae ATCC 51604 PATRIC: 1354253.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Buttiauxella gaviniae ATCC 51604 PATRIC: 1354253.4
[Ref.: #69480]	motile	yes	89.106	no
[Ref.: #69480]	gram-positive	no	97.919	no
[Ref.: #69480]	anaerobic	no	96.967	yes
[Ref.: #69480]	halophile	no	89.534	no
[Ref.: #69480]	spore-forming	no	94.657	no
[Ref.: #69480]	thermophile	no	99.517	yes
[Ref.: #69480]	glucose-util	yes	95.101	no
[Ref.: #69480]	flagellated	no	56.081	no
[Ref.: #69480]	aerobic	yes	87.315	yes
[Ref.: #69480]	glucose-ferment	yes	92.368	no

Availability in culture collections External links

[Ref.: #3469]

Culture collection no.

CCUG 35508, DSM 9393, ATCC 51604, CCM 4875, CIP 106356, CDC 9509-94

[Ref.: #73806]

SI-ID 46913

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov.	Muller HE, Brenner DJ, Fanning GR, Grimont PA, Kampfer P	Int J Syst Bacteriol	10.1099/00207713-46-1-50	1996	*

References

#3469

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9393

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#52778 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35508

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73806

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46913.1 )

#119558 Collection of Institut Pasteur ; Curators of the CIP; CIP 106356
* These data were automatically processed and therefore are not curated

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Buttiauxella gaviniae ATCC 51604

Buttiauxella gaviniae ATCC 51604

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