Strain identifier

BacDive ID: 4297

Type strain: Yes

Species: Thioalkalivibrio thiocyanodenitrificans

Strain history: <- D. Y. Sorokin, Winogradski Inst. Microbiol., RAS, Moscow, Russia; ARhD1

NCBI tax ID(s): 713586 (strain), 243063 (species)

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General

@ref: 6666

BacDive-ID: 4297

DSM-Number: 16954

keywords: 16S sequence, Bacteria

description: Thioalkalivibrio thiocyanodenitrificans DSM 16954 is a bacterium that was isolated from mixed sediment samples from 8 hypersaline, alkaline lakes.

NCBI tax id

NCBI tax idMatching level
713586strain
243063species

strain history

  • @ref: 6666
  • history: <- D. Y. Sorokin, Winogradski Inst. Microbiol., RAS, Moscow, Russia; ARhD1

doi: 10.13145/bacdive4297.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Ectothiorhodospiraceae
  • genus: Thioalkalivibrio
  • species: Thioalkalivibrio thiocyanodenitrificans
  • full scientific name: Thioalkalivibrio thiocyanodenitrificans corrig. Sorokin et al. 2005

  • synonyms

    • @ref: 20215
    • synonym: Thialkalivibrio thiocyanodenitrificans

@ref: 6666

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Ectothiorhodospiraceae

genus: Thioalkalivibrio

species: Thioalkalivibrio thiocyanodenitrificans

full scientific name: Thioalkalivibrio thiocyanodenitrificans Sorokin et al. 2005

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6666
  • name: THIOALKALIVIBRIO THIOCYANODENITRIFICANS MEDIUM (DSMZ Medium 1228)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1228
  • composition: Name: THIOALKALIVIBRIO THIOCYANODENITRIFICANS MEDIUM (DSMZ Medium 1228) Composition: Na2CO3 22.0 g/l Sodium thiosulfate pentahydrate 9.92744 g/l NaHCO3 8.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l KSCN 0.9718 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l MnCl2 x 4 H2O 6e-05 g/l Na2MoO4 x 2 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l MgCl2 x 6 H2O Distilled water

culture temp

  • @ref: 6666
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 6666
  • sample type: mixed sediment samples from 8 hypersaline, alkaline lakes
  • geographic location: Wadi Natrun
  • country: Egypt
  • origin.country: EGY
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment
#Condition#Alkaline
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_3123.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_56;96_121;97_128;98_143;99_3123&stattab=map
  • Last taxonomy: Thioalkalivibrio
  • 16S sequence: AY360060
  • Sequence Identity:
  • Total samples: 1303
  • soil counts: 63
  • aquatic counts: 194
  • animal counts: 1040
  • plant counts: 6

Safety information

risk assessment

  • @ref: 6666
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6666
  • description: Thialkalivibrio thiocyanodenitrificans strain ARhD 16S ribosomal RNA gene, partial sequence
  • accession: AY360060
  • length: 1442
  • database: nuccore
  • NCBI tax ID: 713586

External links

@ref: 6666

culture collection no.: DSM 16954, UNIQEM U226, ArhD ARhD1, ArhD 1

straininfo link

  • @ref: 73789
  • straininfo: 407213

Reference

@idauthorscataloguedoi/urltitle
6666Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16954)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16954
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73789Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407213.1StrainInfo: A central database for resolving microbial strain identifiers