Strain identifier
BacDive ID: 4290
Type strain: 
Species: Thioalkalivibrio thiocyanoxidans
Variant: Isotype of BacDive ID 4291
Strain history: <- D. Y. Sorokin; ARh2
NCBI tax ID(s): 152475 (species)
version 9 (current version)
General
@ref: 5083
BacDive-ID: 4290
DSM-Number: 13542
keywords: Bacteria
description: Thioalkalivibrio thiocyanoxidans DSM 13542 is a bacterium that was isolated from soda lake.
NCBI tax id
- NCBI tax id: 152475
- Matching level: species
strain history
- @ref: 5083
- history: <- D. Y. Sorokin; ARh2
doi: 10.13145/bacdive4290.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Ectothiorhodospiraceae
- genus: Thioalkalivibrio
- species: Thioalkalivibrio thiocyanoxidans
- full scientific name: Thioalkalivibrio thiocyanoxidans corrig. Sorokin et al. 2002
synonyms
- @ref: 20215
- synonym: Thialkalivibrio thiocyanoxidans
@ref: 5083
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Thioalkalivibrio
species: Thioalkalivibrio thiocyanoxidans
full scientific name: Thioalkalivibrio thiocyanoxidans Sorokin et al. 2002
variant: Isotype of BacDive ID 4291
type strain: no
Culture and growth conditions
culture medium
- @ref: 5083
- name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)
- growth: yes
- link: https://mediadive.dsmz.de/medium/925
- composition: Name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925) Composition: Na2CO3 20.0 g/l NaHCO3 10.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water
culture temp
- @ref: 5083
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 5083
- sample type: soda lake
- country: Kenya
- origin.country: KEN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Alkaline |
Safety information
risk assessment
- @ref: 5083
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 5083
culture collection no.: DSM 13542, ARh 2, DSM 13532
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11931180 | Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes. | Sorokin DY, Tourova TP, Lysenko AM, Mityushina LL, Kuenen JG | Int J Syst Evol Microbiol | 10.1099/00207713-52-2-657 | 2002 | DNA, Bacterial/chemistry, Egypt, Fresh Water/*microbiology, Gammaproteobacteria/*classification/genetics/physiology, Kenya, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/chemistry, Siberia, Species Specificity, Sulfur/chemistry/*metabolism, Thiocyanates/*metabolism | Genetics |
| Genetics | 26512310 | Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T). | Berben T, Sorokin DY, Ivanova N, Pati A, Kyrpides N, Goodwin LA, Woyke T, Muyzer G | Stand Genomic Sci | 10.1186/s40793-015-0078-x | 2015 | ||
| 29285524 | Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T) Using Transcriptomics. | Berben T, Balkema C, Sorokin DY, Muyzer G | mSystems | 10.1128/mSystems.00102-17 | 2017 | |||
| Stress | 31333619 | Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway. | Ahn AC, Cavalca L, Colombo M, Schuurmans JM, Sorokin DY, Muyzer G | Front Microbiol | 10.3389/fmicb.2019.01514 | 2019 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5083 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13542) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13542 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ |