Strain identifier

BacDive ID: 4235

Type strain: Yes

Species: Desulfuromonas palmitatis

Strain Designation: SDBY1

Strain history: <- ATCC <- J.D. Coates, SDBY1

NCBI tax ID(s): 40982 (species)

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General

@ref: 4626

BacDive-ID: 4235

DSM-Number: 12391

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfuromonas palmitatis SDBY1 is an anaerobe, mesophilic bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 40982
  • Matching level: species

strain history

  • @ref: 4626
  • history: <- ATCC <- J.D. Coates, SDBY1

doi: 10.13145/bacdive4235.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfuromonadales
  • family: Desulfuromonadaceae
  • genus: Desulfuromonas
  • species: Desulfuromonas palmitatis
  • full scientific name: Desulfuromonas palmitatis Coates et al. 2000

@ref: 4626

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfuromonadales

family: Desulfuromonadaceae

genus: Desulfuromonas

species: Desulfuromonas palmitatis

full scientific name: Desulfuromonas palmitatis Coates et al. 2000

strain designation: SDBY1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 4626
  • name: DESULFUROMONAS PALMITATIS MEDIUM (DSMZ Medium 837)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/837
  • composition: Name: DESULFUROMONAS PALMITATIS MEDIUM (DSMZ Medium 837) Composition: MgCl2 x 6 H2O 10.5788 g/l Na2-fumarate 7.98403 g/l CaCl2 x 2 H2O 1.49701 g/l Na-acetate x 3 H2O 1.37289 g/l NH4Cl 1.00948 g/l Na2CO3 0.998004 g/l KCl 0.777296 g/l KH2PO4 0.100948 g/l Na2S2O4 0.0499002 g/l NaHCO3 0.0499002 g/l MgSO4 x 7 H2O 0.0302843 g/l Nitrilotriacetic acid 0.0151421 g/l NaCl 0.0100948 g/l MnSO4 x H2O 0.00504738 g/l ZnSO4 x 7 H2O 0.00181706 g/l CoSO4 x 7 H2O 0.00181706 g/l FeSO4 x 7 H2O 0.00100948 g/l Sodium resazurin 0.000504738 g/l NiCl2 x 6 H2O 0.000302843 g/l AlK(SO4)2 x 12 H2O 0.000201895 g/l CuSO4 x 5 H2O 0.000100948 g/l H3BO3 0.000100948 g/l Na2MoO4 x 2 H2O 0.000100948 g/l Pyridoxine hydrochloride 9.98004e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l Na2WO4 x 2 H2O 4.0379e-06 g/l Na2SeO3 x 5 H2O 3.02843e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

culture temp

  • @ref: 4626
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4626
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4626
  • sample type: marine sediment
  • geographic location: San Diego Bay near Patella Creek
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_167827.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_50;96_28057;97_35335;98_45641;99_167827&stattab=map
  • Last taxonomy: Desulfuromonas palmitatis subclade
  • 16S sequence: U28172
  • Sequence Identity:
  • Total samples: 438
  • soil counts: 113
  • aquatic counts: 287
  • animal counts: 36
  • plant counts: 2

Safety information

risk assessment

  • @ref: 4626
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4626
  • description: Desulfuromonas palmitatis 16S ribosomal RNA gene, partial sequence
  • accession: U28172
  • length: 1471
  • database: ena
  • NCBI tax ID: 40982

External links

@ref: 4626

culture collection no.: DSM 12391, ATCC 51701

straininfo link

  • @ref: 73732
  • straininfo: 45312

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Phylogeny8588742Desulfuromonas palmitatis sp. nov., a marine dissimilatory Fe(III) reducer that can oxidize long-chain fatty acids.Coates JD, Lonergan DJ, Philips EJ, Jenter H, Lovley DRArch Microbiol1995Electron Transport, Fatty Acids/*metabolism, Gram-Negative Anaerobic Bacteria/genetics/*metabolism/ultrastructure, Iron/*metabolism, Microscopy, Electron, Scanning, Oxidation-Reduction, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Water MicrobiologyMetabolism
Phylogeny19329606Geoalkalibacter subterraneus sp. nov., an anaerobic Fe(III)- and Mn(IV)-reducing bacterium from a petroleum reservoir, and emended descriptions of the family Desulfuromonadaceae and the genus Geoalkalibacter.Greene AC, Patel BK, Yacob SInt J Syst Evol Microbiol2009Anaerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Deltaproteobacteria/*classification/genetics/*isolation & purification/physiology, *Environmental Microbiology, Molecular Sequence Data, *Petroleum, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, United StatesGenetics10.1099/ijs.0.001537-0

Reference

@idauthorscataloguedoi/urltitle
4626Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12391)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12391
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73732Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45312.1StrainInfo: A central database for resolving microbial strain identifiers