Strain identifier
BacDive ID: 4150
Type strain: 
Species: Oleidesulfovibrio alaskensis
Strain Designation: AL1
Strain history: <- I. B. Beech, University of Portsmouth, Portsmouth, UK; AL1 <- V. Zinkevich {1993}
NCBI tax ID(s): 1121436 (strain), 58180 (species)
version 8.1 (current version)
General
@ref: 6299
BacDive-ID: 4150
DSM-Number: 16109
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, vibrio-shaped
description: Oleidesulfovibrio alaskensis AL1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from gravel material from soured oil reservoir.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 58180 | species |
| 1121436 | strain |
strain history
- @ref: 6299
- history: <- I. B. Beech, University of Portsmouth, Portsmouth, UK; AL1 <- V. Zinkevich {1993}
doi: 10.13145/bacdive4150.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Oleidesulfovibrio
- species: Oleidesulfovibrio alaskensis
- full scientific name: Oleidesulfovibrio alaskensis (Feio et al. 2004) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Desulfovibrio alaskensis
@ref: 6299
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Oleidesulfovibrio
species: Oleidesulfovibrio alaskensis
full scientific name: Oleidesulfovibrio alaskensis (Feio et al. 2004) Waite et al. 2020
strain designation: AL1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
|---|---|---|---|---|---|---|---|
| 23212 | negative | 1.0-5.0 µm | 0.5-1.2 µm | vibrio-shaped | yes | polar | |
| 69480 | yes | 95.798 | |||||
| 69480 | negative | 99.991 |
colony morphology
- @ref: 23212
- medium used: Postgate medium C
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 6299 | DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) | yes | https://mediadive.dsmz.de/medium/195c | Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c; with strain-specific modifications) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Trypticase peptone 1.99402 g/l Casamino acids 1.99402 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water |
| 23212 | Postgate medium C | yes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6299 | positive | growth | 37 | mesophilic |
| 23212 | positive | growth | 10-45 | |
| 23212 | positive | optimum | 37 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 23212 | positive | growth | 6.5-8.5 | alkaliphile |
| 23212 | positive | optimum | 7.0 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 6299 | anaerobe | |
| 23212 | anaerobe | |
| 69480 | anaerobe | 99.381 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 23212 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.971 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 23212 | NaCl | positive | growth | 0-10 %(w/v) |
| 23212 | NaCl | positive | optimum | 2.5 %(w/v) |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 23212 | 17632 | nitrate | - | electron acceptor |
| 23212 | 24996 | lactate | + | carbon source |
| 23212 | 28885 | butanol | + | fermentation |
| 23212 | 16236 | ethanol | + | fermentation |
| 23212 | 24996 | lactate | + | oxidation |
| 23212 | 15361 | pyruvate | + | oxidation |
| 23212 | 30031 | succinate | + | oxidation |
| 23212 | 16189 | sulfate | + | reduction |
| 23212 | 17359 | sulfite | + | reduction |
| 23212 | 16094 | thiosulfate | + | reduction |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 6299 | gravel material from soured oil reservoir | Alaska, Purdu Bay | USA | USA | North America |
| 23212 | production fluids of offshore oilfields |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Engineered product |
| #Engineered | #Industrial | #Oil reservoir |
taxonmaps
- @ref: 69479
- File name: preview.99_5199.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15928;96_2528;97_3087;98_3876;99_5199&stattab=map
- Last taxonomy: Desulfovibrio alaskensis
- 16S sequence: Y11984
- Sequence Identity:
- Total samples: 5843
- soil counts: 146
- aquatic counts: 908
- animal counts: 4744
- plant counts: 45
Safety information
risk assessment
- @ref: 6299
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6299
- description: Desulfovibrio alaskensis partial 16S rRNA gene, type strain NCIMB 13491
- accession: Y11984
- length: 1530
- database: ena
- NCBI tax ID: 58180
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Oleidesulfovibrio alaskensis DSM 16109 | GCA_000482745 | scaffold | ncbi | 1121436 |
| 66792 | Desulfovibrio alaskensis DSM 16109 | 1121436.3 | wgs | patric | 1121436 |
| 66792 | Desulfovibrio alaskensis DSM 16109 | 2528311093 | draft | img | 1121436 |
GC content
| @ref | GC-content |
|---|---|
| 6299 | 54.06 |
| 23212 | 64.1 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 90.71 | yes |
| flagellated | yes | 58.05 | no |
| gram-positive | no | 99.307 | yes |
| anaerobic | yes | 98.362 | yes |
| aerobic | no | 98.756 | yes |
| halophile | no | 59.101 | no |
| spore-forming | no | 95.029 | yes |
| thermophile | no | 94.988 | no |
| glucose-util | yes | 59.842 | no |
| glucose-ferment | no | 75.351 | no |
External links
@ref: 6299
culture collection no.: DSM 16109, NCIMB 13491
straininfo link
- @ref: 73651
- straininfo: 60912
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 10727945 | Aldehyde oxidoreductase activity in Desulfovibrio alaskensis NCIMB 13491 EPR assignment of the proximal [2Fe-2S] cluster to the Mo site. | Andrade SL, Brondino CD, Feio MJ, Moura I, Moura JJ | Eur J Biochem | 10.1046/j.1432-1327.2000.01209.x | 2000 | Aldehyde Oxidoreductases/chemistry/isolation & purification/*metabolism, Desulfovibrio/*enzymology, Electron Spin Resonance Spectroscopy, Iron-Sulfur Proteins/*chemistry, Molybdenum/*chemistry, Oxidation-Reduction, Spectrophotometry, Ultraviolet | Phylogeny |
| Enzymology | 14669076 | Incorporation of either molybdenum or tungsten into formate dehydrogenase from Desulfovibrio alaskensis NCIMB 13491; EPR assignment of the proximal iron-sulfur cluster to the pterin cofactor in formate dehydrogenases from sulfate-reducing bacteria. | Brondino CD, Passeggi MC, Caldeira J, Almendra MJ, Feio MJ, Moura JJ, Moura I | J Biol Inorg Chem | 10.1007/s00775-003-0506-z | 2003 | Chromatography, Gel, Chromatography, High Pressure Liquid, Desulfovibrio/chemistry/*enzymology/growth & development, Electromagnetic Fields, Electron Spin Resonance Spectroscopy, Electrophoresis, Polyacrylamide Gel, Formate Dehydrogenases/chemistry/*metabolism, Iron/*chemistry, Molecular Weight, Molybdenum/*metabolism, Oxidation-Reduction, Pterins/*chemistry, Spectrophotometry, Ultraviolet, Sulfates/metabolism, Sulfur/*chemistry, Tungsten/*metabolism | Metabolism |
| Phylogeny | 15388739 | Desulfovibrio alaskensis sp. nov., a sulphate-reducing bacterium from a soured oil reservoir. | Feio MJ, Zinkevich V, Beech IB, Llobet-Brossa E, Eaton P, Schmitt J, Guezennec J | Int J Syst Evol Microbiol | 10.1099/ijs.0.63118-0 | 2004 | Alaska, Bacterial Proteins/analysis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Desulfovibrio/*classification/cytology/isolation & purification/*metabolism/physiology, Fatty Acids/analysis, Fermentation, Flagella, Genes, rRNA, Growth Inhibitors/pharmacology, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Oxidation-Reduction, Petroleum/*microbiology, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/pharmacology, Soil Microbiology, Sulfates/*metabolism, Temperature | Enzymology |
| Enzymology | 15715870 | Production of antimicrobial substances by Bacillus subtilis LFE-1, B. firmus HO-1 and B. licheniformis T6-5 isolated from an oil reservoir in Brazil. | Korenblum E, der Weid I, Santos AL, Rosado AS, Sebastian GV, Coutinho CM, Magalhaes FC, Paiva MM, Seldin L | J Appl Microbiol | 10.1111/j.1365-2672.2004.02518.x | 2005 | Bacillus/growth & development/isolation & purification/metabolism, Bacillus subtilis/growth & development/isolation & purification/*metabolism, Bacteriocins/*biosynthesis, Bioreactors, Brazil, Electrophoresis, Polyacrylamide Gel, Hot Temperature, Hydrogen-Ion Concentration, *Industrial Microbiology, Microbial Sensitivity Tests, *Petroleum, Species Specificity, Sulfur-Reducing Bacteria | Phylogeny |
| Enzymology | 21478344 | Effects of molybdate and tungstate on expression levels and biochemical characteristics of formate dehydrogenases produced by Desulfovibrio alaskensis NCIMB 13491. | Mota CS, Valette O, Gonzalez PJ, Brondino CD, Moura JJ, Moura I, Dolla A, Rivas MG | J Bacteriol | 10.1128/JB.01531-10 | 2011 | Desulfovibrio/*enzymology/metabolism, Formate Dehydrogenases/genetics/*metabolism, Gene Expression Regulation, Bacterial/*drug effects, Gene Expression Regulation, Enzymologic/*drug effects, Molybdenum/*pharmacology, Tungsten/*pharmacology | Metabolism |
| Metabolism | 23484107 | Streptomyces lunalinharesii strain 235 shows the potential to inhibit bacteria involved in biocorrosion processes. | Pacheco da Rosa J, Korenblum E, Franco-Cirigliano MN, Abreu F, Lins U, Soares RM, Macrae A, Seldin L, Coelho RR | Biomed Res Int | 10.1155/2013/309769 | 2013 | Anti-Infective Agents/*metabolism, Bacillus/*physiology, Bacterial Proteins/*metabolism, Biofilms/*growth & development, Corrosion, Desulfovibrio/*physiology, Streptomyces/*metabolism | |
| Metabolism | 28422054 | Growth Inhibition of Sulfate-Reducing Bacteria in Produced Water from the Petroleum Industry Using Essential Oils. | Souza PM, Goulart FRV, Marques JM, Bizzo HR, Blank AF, Groposo C, Sousa MP, Volaro V, Alviano CS, Moreno DSA, Seldin L | Molecules | 10.3390/molecules22040648 | 2017 | Anti-Bacterial Agents/*pharmacology, Bacteria/*drug effects/genetics/*metabolism, Microbial Sensitivity Tests, *Oil and Gas Industry, Oils, Volatile/*pharmacology, Sulfates/*metabolism, *Water | Pathogenicity |
| 30965126 | Desulfovibrio alaskensis prophages and their possible involvement in the horizontal transfer of genes by outer membrane vesicles. | Crispim JS, Dias RS, Laguardia CN, Araujo LC, da Silva JD, Vidigal PMP, de Sousa MP, da Silva CC, Santana MF, de Paula SO | Gene | 10.1016/j.gene.2019.04.016 | 2019 | Desulfovibrio/growth & development/*virology, *Gene Transfer, Horizontal, Mitomycin/pharmacology, Prophages/*genetics, Transcription, Genetic, Transport Vesicles/*genetics, Viral Proteins/genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6299 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16109) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16109 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 23212 | Maria J. Feio, Vitaly Zinkevich, Iwona B. Beech, Enric Llobet-Brossa, Peter Eaton, Jürgen Schmitt, Jean Guezennec | 10.1099/ijs.0.63118-0 | Desulfovibrio alaskensis sp. nov., a sulphate-reducing bacterium from a soured oil reservoir | IJSEM 54: 1747-1752 2004 | 15388739 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 73651 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID60912.1 | StrainInfo: A central database for resolving microbial strain identifiers |