Name: Oleidesulfovibrio alaskensis AL1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4150

Type strain:

Species: Oleidesulfovibrio alaskensis

Strain Designation: AL1

Culture col. no.: DSM 16109, NCIMB 13491

Strain history: <- I. B. Beech, University of Portsmouth, Portsmouth, UK; AL1 <- V. Zinkevich {1993}

NCBI tax ID(s): 1121436 (strain), 58180 (species)

SI-ID 60912

NCIMB 13491, DSM 16109

Other strains from Oleidesulfovibrio alaskensis

O. alaskensis G20, DSM 17464, ATCC BAA-1058
O. alaskensis HEB 223, HEB223, DSM 18476

Section

Oleidesulfovibrio alaskensis AL1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from gravel material from soured oil reservoir.

Gram-negative
motile
vibrio-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Oleidesulfovibrio*
	Species	**Oleidesulfovibrio alaskensis**
	Full Scientific Name (LPSN)	Oleidesulfovibrio alaskensis (Feio et al. 2004) Waite et al. 2020

Synonym

Desulfovibrio alaskensis

Information on morphological and physiological properties Morphology

[Ref.: #23212]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #23212]	Cell length	1.0-5.0 µm

[Ref.: #23212]	Cell width	0.5-1.2 µm

[Ref.: #23212]	Cell shape	vibrio-shaped

[Ref.: #23212]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.798

[Ref.: #23212]	Flagellum arrangement	polar

[Ref.: #23212]

Cultivation medium used

Postgate medium C

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6299]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #6299]

Culture medium growth

[Ref.: #6299]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6299]

Culture medium composition

expand / minimize

[Ref.: #23212]

Culture medium

Postgate medium C

[Ref.: #23212]

Culture medium growth

		Temperature
[Ref.: #6299]	growth	37 °C
[Ref.: #23212]	growth	10-45 °C
[Ref.: #23212]	optimum	37 °C

[Ref.: #6299]	Temperature range	mesophilic
[Ref.: #23212]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23212]			optimum	7.0
[Ref.: #23212]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6299]	Oxygen tolerance	anaerobe
[Ref.: #23212]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.381

[Ref.: #23212]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.971

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23212]		NaCl		growth	0-10	%(w/v)
[Ref.: #23212]		NaCl		optimum	2.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23212]	butanol ChEBI	+	fermentation
[Ref.: #23212]	ethanol ChEBI	+	fermentation
[Ref.: #23212]	lactate ChEBI	+	carbon source
[Ref.: #23212]	lactate ChEBI	+	oxidation
[Ref.: #23212]	nitrate ChEBI	-	electron acceptor
[Ref.: #23212]	pyruvate ChEBI	+	oxidation
[Ref.: #23212]	succinate ChEBI	+	oxidation
[Ref.: #23212]	sulfate ChEBI	+	reduction
[Ref.: #23212]	sulfite ChEBI	+	reduction
[Ref.: #23212]	thiosulfate ChEBI	+	reduction

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6299]	Sample type/isolated from	gravel material from soured oil reservoir
[Ref.: #6299]	Geographic location (country and/or sea, region)	Alaska, Purdu Bay
[Ref.: #6299]	Country	USA
[Ref.: #6299]	Country ISO 3 Code	USA
[Ref.: #6299]	Continent	North America

[Ref.: #23212]	Sample type/isolated from	production fluids of offshore oilfields
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Oil reservoir

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y11984 (>99% sequence identity) for Desulfovibrio alaskensis from Microbeatlas

Aquatic Samples	908
Soil Samples	146
Animal Samples	4744
Plant Samples	45
Total Samples	5843

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6299]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6299]	Desulfovibrio alaskensis partial 16S rRNA gene, type strain NCIMB 13491	Y11984	1530	ENA	58180 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oleidesulfovibrio alaskensis DSM 16109	GCA_000482745	scaffold	GenBank	1121436 tax ID	*
[Ref.: #66792]	Desulfovibrio alaskensis DSM 16109	1121436.3	wgs	PATRIC	1121436 tax ID	*
[Ref.: #66792]	Desulfovibrio alaskensis DSM 16109	2528311093	draft	JGI IMG/M	1121436 tax ID	*

[Ref.: #6299]	GC-content	54.06 mol%
[Ref.: #23212]	GC-content	64.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio alaskensis DSM 16109 DSM 16109 NCBI: GCA_000482745.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio alaskensis DSM 16109 DSM 16109 NCBI: GCA_000482745.1
[Ref.: #69480]	motile	yes	90.71	yes
[Ref.: #69480]	flagellated	yes	58.05	no
[Ref.: #69480]	gram-positive	no	99.307	yes
[Ref.: #69480]	anaerobic	yes	98.362	yes
[Ref.: #69480]	aerobic	no	98.756	yes
[Ref.: #69480]	halophile	no	59.101	no
[Ref.: #69480]	spore-forming	no	95.029	yes
[Ref.: #69480]	thermophile	no	94.988	no
[Ref.: #69480]	glucose-util	yes	59.842	no
[Ref.: #69480]	glucose-ferment	no	75.351	no

Availability in culture collections External links

[Ref.: #6299]

Culture collection no.

DSM 16109, NCIMB 13491

[Ref.: #73651]

SI-ID 60912

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Growth Inhibition of Sulfate-Reducing Bacteria in Produced Water from the Petroleum Industry Using Essential Oils.	Souza PM, Goulart FRV, Marques JM, Bizzo HR, Blank AF, Groposo C, Sousa MP, Volaro V, Alviano CS, Moreno DSA, Seldin L	Molecules	10.3390/molecules22040648	2017	*
Metabolism	Streptomyces lunalinharesii strain 235 shows the potential to inhibit bacteria involved in biocorrosion processes.	Pacheco da Rosa J, Korenblum E, Franco-Cirigliano MN, Abreu F, Lins U, Soares RM, Macrae A, Seldin L, Coelho RR	Biomed Res Int	10.1155/2013/309769	2013	*
Enzymology	Effects of molybdate and tungstate on expression levels and biochemical characteristics of formate dehydrogenases produced by Desulfovibrio alaskensis NCIMB 13491.	Mota CS, Valette O, Gonzalez PJ, Brondino CD, Moura JJ, Moura I, Dolla A, Rivas MG	J Bacteriol	10.1128/JB.01531-10	2011	*
Enzymology	Production of antimicrobial substances by Bacillus subtilis LFE-1, B. firmus HO-1 and B. licheniformis T6-5 isolated from an oil reservoir in Brazil.	Korenblum E, der Weid I, Santos AL, Rosado AS, Sebastian GV, Coutinho CM, Magalhaes FC, Paiva MM, Seldin L	J Appl Microbiol	10.1111/j.1365-2672.2004.02518.x	2005	*
Phylogeny	Desulfovibrio alaskensis sp. nov., a sulphate-reducing bacterium from a soured oil reservoir.	Feio MJ, Zinkevich V, Beech IB, Llobet-Brossa E, Eaton P, Schmitt J, Guezennec J	Int J Syst Evol Microbiol	10.1099/ijs.0.63118-0	2004	*
Enzymology	Incorporation of either molybdenum or tungsten into formate dehydrogenase from Desulfovibrio alaskensis NCIMB 13491; EPR assignment of the proximal iron-sulfur cluster to the pterin cofactor in formate dehydrogenases from sulfate-reducing bacteria.	Brondino CD, Passeggi MC, Caldeira J, Almendra MJ, Feio MJ, Moura JJ, Moura I	J Biol Inorg Chem	10.1007/s00775-003-0506-z	2003	*
Enzymology	Aldehyde oxidoreductase activity in Desulfovibrio alaskensis NCIMB 13491 EPR assignment of the proximal [2Fe-2S] cluster to the Mo site.	Andrade SL, Brondino CD, Feio MJ, Moura I, Moura JJ	Eur J Biochem	10.1046/j.1432-1327.2000.01209.x	2000	*
	Desulfovibrio alaskensis prophages and their possible involvement in the horizontal transfer of genes by outer membrane vesicles.	Crispim JS, Dias RS, Laguardia CN, Araujo LC, da Silva JD, Vidigal PMP, de Sousa MP, da Silva CC, Santana MF, de Paula SO	Gene	10.1016/j.gene.2019.04.016	2019	*

References

#6299

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16109

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23212

Maria J. Feio, Vitaly Zinkevich, Iwona B. Beech, Enric Llobet-Brossa, Peter Eaton, Jürgen Schmitt, Jean Guezennec: Desulfovibrio alaskensis sp. nov., a sulphate-reducing bacterium from a soured oil reservoir. IJSEM 54: 1747 - 1752 2004 ( DOI 10.1099/ijs.0.63118-0 , PubMed 15388739 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73651

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID60912.1 )

* These data were automatically processed and therefore are not curated

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Desulfovibrio alaskensis DSM 16109 DSM 16109

Desulfovibrio alaskensis DSM 16109 DSM 16109

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