Oleidesulfovibrio alaskensis (DSM 16109, NCIMB 13491, AL1)

Name: Oleidesulfovibrio alaskensis (DSM 16109, NCIMB 13491, AL1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4150

Type strain

Strain Designation AL1

Culture col. no. DSM 16109 NCIMB 13491 AL1

NCBI tax ID(s) 1121436 58180

Special Collections DSMZ Literature strains

History <- I. B. Beech, University of Portsmouth, Portsmouth, UK; AL1 <- V. Zinkevich {1993}

Links

Oleidesulfovibrio alaskensis AL1 is an anaerobe, Gram-negative, motile bacterium that was isolated from gravel material from soured oil reservoir.

Gram-negative motile vibrio-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 60912

NCIMB 13491,DSM 16109

@ref 20215

Last LPSN update 2026-02-09 11:18:39

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Oleidesulfovibrio

Species Oleidesulfovibrio alaskensis

Full scientific name Oleidesulfovibrio alaskensis (Feio et al. 2004) Waite et al. 2020

Synonyms (1)

Desulfovibrio alaskensis

BacDive ID	Other strains from **Oleidesulfovibrio alaskensis** (2)	Type strain
4122	O. alaskensis G20, DSM 17464, ATCC BAA-1058
131100	O. alaskensis HEB 223, HEB223, DSM 18476

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
23212	negative	1.0-5.0 µm	0.5-1.2 µm	vibrio-shaped	polar
125438	negative					96.483
125439						94.3
125439	negative					100

Colony morphology

23212

Medium usedPostgate medium C

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6299	DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)		Medium recipe at MediaDive	Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c; with strain-specific modifications) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Trypticase peptone 1.99402 g/l Casamino acids 1.99402 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
23212	Postgate medium C

Culture temp

@ref	Growth	Type	Temperature (°C)
6299	positive	growth	37
23212	positive	growth	10-45
23212	positive	optimum	37

Culture pH

@ref	Ability	Type	PH	PH range
23212	positive	optimum	7.0
23212	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6299	anaerobe
23212	anaerobe
125439	obligate aerobe	96.2

Spore formation

@ref	Spore formation	Confidence
23212
125438		91.945
125439		99.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23212	NaCl	positive	growth	0-10 %(w/v)
23212	NaCl	positive	optimum	2.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23212	28885 ChEBI	butanol	+	fermentation
23212	16236 ChEBI	ethanol	+	fermentation
23212	24996 ChEBI	lactate	+	carbon source
23212	24996 ChEBI	lactate	+	oxidation
23212	17632 ChEBI	nitrate	-	electron acceptor
23212	15361 ChEBI	pyruvate	+	oxidation
23212	30031 ChEBI	succinate	+	oxidation
23212	16189 ChEBI	sulfate	+	reduction
23212	17359 ChEBI	sulfite	+	reduction
23212	16094 ChEBI	thiosulfate	+	reduction

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Oil reservoir

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6299	gravel material from soured oil reservoir	Alaska, Purdu Bay	USA	USA	North America
23212	production fluids of offshore oilfields

Taxonmaps

69479

Global distribution of 16S sequence Y11984 (>99% sequence identity) for Desulfovibrio alaskensis from Microbeatlas

Aquatic Samples	908
Soil Samples	146
Animal Samples	4744
Plant Samples	45
Total Samples	5843

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6299	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM48274v1 assembly for Oleidesulfovibrio alaskensis DSM 16109	scaffold	GCA_000482745	1121436.3	2528311093	1121436	72.75

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6299	Desulfovibrio alaskensis partial 16S rRNA gene, type strain NCIMB 13491	Y11984	1530		58180

GC content

@ref	GC-content (mol%)
6299	54.06
23212	64.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Oleidesulfovibrio alaskensis DSM 16109
NCBI: GCA_000482745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.20	no
125439	gram_stain	BacteriaNetⓘ	negative	100.00	no
125439	motility	BacteriaNetⓘ	yes	94.30	no
125439	spore_formation	BacteriaNetⓘ	no	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfovibrio alaskensis DSM 16109 DSM 16109
NCBI: GCA_000482745.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.48	yes
125438	anaerobic	anaerobicⓘ	yes	75.60	yes
125438	aerobic	aerobicⓘ	no	88.10	yes
125438	spore-forming	spore-formingⓘ	no	91.95	yes
125438	thermophilic	thermophileⓘ	no	90.80	no
125438	flagellated	motile2+ⓘ	yes	78.05	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Distribution and characterization of N-acylhomoserine lactone (AHL)-degrading activity and AHL lactonase gene (qsdS) in Sphingopyxis.	Morohoshi T, Kamimura Y, Sato N, Iizumi T.	J Biosci Bioeng	10.1016/j.jbiosc.2018.10.005	2019
	Draft Genome Sequences of Type Strains of Gordonibacter faecihominis, Paraeggerthella hongkongensis, Parvibacter caecicola,Slackia equolifaciens, Slackia faecicanis, and Slackia isoflavoniconvertens.	Danylec N, Stoll DA, Dotsch A, Huch M.	Microbiol Resour Announc	10.1128/mra.01532-18	2019
Metabolism	Metabolism of Daidzein and Genistein by Gut Bacteria of the Class Coriobacteriia.	Soukup ST, Stoll DA, Danylec N, Schoepf A, Kulling SE, Huch M.	Foods	10.3390/foods10112741	2021
	High-efficiency production of 5-hydroxyectoine using metabolically engineered Corynebacterium glutamicum.	Jungmann L, Hoffmann SL, Lang C, De Agazio R, Becker J, Kohlstedt M, Wittmann C.	Microb Cell Fact	10.1186/s12934-022-02003-z	2022
Phylogeny	Application of denaturing high-performance liquid chromatography for monitoring sulfate-reducing bacteria in oil fields.	Priha O, Nyyssonen M, Bomberg M, Laitila A, Simell J, Kapanen A, Juvonen R.	Appl Environ Microbiol	10.1128/aem.01015-13	2013
Metabolism	New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.	Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS.	J Bacteriol	10.1128/jb.00679-13	2013
	Desulfovibrio alaskensis prophages and their possible involvement in the horizontal transfer of genes by outer membrane vesicles.	Crispim JS, Dias RS, Laguardia CN, Araujo LC, da Silva JD, Vidigal PMP, de Sousa MP, da Silva CC, Santana MF, de Paula SO	Gene	10.1016/j.gene.2019.04.016	2019
Metabolism	Growth Inhibition of Sulfate-Reducing Bacteria in Produced Water from the Petroleum Industry Using Essential Oils.	Souza PM, Goulart FRV, Marques JM, Bizzo HR, Blank AF, Groposo C, Sousa MP, Volaro V, Alviano CS, Moreno DSA, Seldin L	Molecules	10.3390/molecules22040648	2017
Metabolism	Streptomyces lunalinharesii strain 235 shows the potential to inhibit bacteria involved in biocorrosion processes.	Pacheco da Rosa J, Korenblum E, Franco-Cirigliano MN, Abreu F, Lins U, Soares RM, Macrae A, Seldin L, Coelho RR	Biomed Res Int	10.1155/2013/309769	2013
Enzymology	Effects of molybdate and tungstate on expression levels and biochemical characteristics of formate dehydrogenases produced by Desulfovibrio alaskensis NCIMB 13491.	Mota CS, Valette O, Gonzalez PJ, Brondino CD, Moura JJ, Moura I, Dolla A, Rivas MG	J Bacteriol	10.1128/JB.01531-10	2011
Enzymology	Production of antimicrobial substances by Bacillus subtilis LFE-1, B. firmus HO-1 and B. licheniformis T6-5 isolated from an oil reservoir in Brazil.	Korenblum E, der Weid I, Santos AL, Rosado AS, Sebastian GV, Coutinho CM, Magalhaes FC, Paiva MM, Seldin L	J Appl Microbiol	10.1111/j.1365-2672.2004.02518.x	2005
Enzymology	Incorporation of either molybdenum or tungsten into formate dehydrogenase from Desulfovibrio alaskensis NCIMB 13491; EPR assignment of the proximal iron-sulfur cluster to the pterin cofactor in formate dehydrogenases from sulfate-reducing bacteria.	Brondino CD, Passeggi MC, Caldeira J, Almendra MJ, Feio MJ, Moura JJ, Moura I	J Biol Inorg Chem	10.1007/s00775-003-0506-z	2003
Enzymology	Aldehyde oxidoreductase activity in Desulfovibrio alaskensis NCIMB 13491 EPR assignment of the proximal [2Fe-2S] cluster to the Mo site.	Andrade SL, Brondino CD, Feio MJ, Moura I, Moura JJ	Eur J Biochem	10.1046/j.1432-1327.2000.01209.x	2000
Phylogeny	Desulfovibrio alaskensis sp. nov., a sulphate-reducing bacterium from a soured oil reservoir.	Feio MJ, Zinkevich V, Beech IB, Llobet-Brossa E, Eaton P, Schmitt J, Guezennec J	Int J Syst Evol Microbiol	10.1099/ijs.0.63118-0	2004

References

#6299	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16109
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23212	Maria J. Feio, Vitaly Zinkevich, Iwona B. Beech, Enric Llobet-Brossa, Peter Eaton, Jürgen Schmitt, Jean Guezennec: Desulfovibrio alaskensis sp. nov., a sulphate-reducing bacterium from a soured oil reservoir. IJSEM 54: 1747 - 1752 2004 ( DOI 10.1099/ijs.0.63118-0 , PubMed 15388739 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Oleidesulfovibrio alaskensis (DSM 16109, NCIMB 13491, AL1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000482745

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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