Strain identifier

BacDive ID: 4146

Type strain: Yes

Species: Salidesulfovibrio brasiliensis

Strain Designation: LVform1

Strain history: R. Warthmann LVform1.

NCBI tax ID(s): 221711 (species)

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General

@ref: 6120

BacDive-ID: 4146

DSM-Number: 15816

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile

description: Salidesulfovibrio brasiliensis LVform1 is an anaerobe, mesophilic, motile bacterium that was isolated from hypersaline anoxic sediment.

NCBI tax id

  • NCBI tax id: 221711
  • Matching level: species

strain history

@refhistory
6120<- R. Warthmann; LVform1
67770R. Warthmann LVform1.

doi: 10.13145/bacdive4146.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Salidesulfovibrio
  • species: Salidesulfovibrio brasiliensis
  • full scientific name: Salidesulfovibrio brasiliensis Park et al. 2022

  • synonyms

    @refsynonym
    20215Pseudodesulfovibrio brasiliensis
    20215Desulfovibrio brasiliensis

@ref: 6120

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Desulfovibrio

species: Desulfovibrio brasiliensis

full scientific name: Desulfovibrio brasiliensis Warthmann et al. 2005

strain designation: LVform1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes93.739
6948099.984negative

Culture and growth conditions

culture medium

  • @ref: 6120
  • name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/195c
  • composition: Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6120positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
6120anaerobe
69480anaerobe99.999

spore formation

@refspore formationconfidence
69481no100
69480no99.216

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6120hypersaline anoxic sedimentLagoa VermelhaBrazilBRAMiddle and South America
67770Sediments of a hypersaline coastal lagoonLagoa Vermelha, Rio de JaneiroBrazilBRAMiddle and South America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Condition#Anoxic (anaerobic)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_3423.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_320;96_1791;97_2143;98_2626;99_3423&stattab=map
  • Last taxonomy: Desulfovibrio brasiliensis subclade
  • 16S sequence: AJ544687
  • Sequence Identity:
  • Total samples: 97
  • soil counts: 11
  • aquatic counts: 65
  • animal counts: 20
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 6120
  • description: Desulfovibrio brasiliensis 16S rRNA gene, type strain LVform1T
  • accession: AJ544687
  • length: 1503
  • database: ena
  • NCBI tax ID: 221711

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfovibrio brasiliensis JCM 121781294020.3wgspatric1294020
66792Desulfovibrio brasiliensis JCM 121782728369698draftimg1294020
67770Salidesulfovibrio brasiliensis JCM 12178GCA_001311825contigncbi1294020

GC content

  • @ref: 6120
  • GC-content: 56.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.412no
gram-positiveno99.244no
anaerobicyes98.975yes
aerobicno98.31yes
halophileno53.987no
spore-formingno95.53no
thermophileno95.126no
glucose-utilno58.546no
flagellatedyes65.431no
glucose-fermentno84.347no

External links

@ref: 6120

culture collection no.: DSM 15816, JCM 12178

Reference

@idauthorscataloguedoi/urltitle
6120Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15816)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15816
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1