Strain identifier
BacDive ID: 392
Type strain: 
Species: Alcanivorax jadensis
Strain Designation: T9
Strain history: <- L. Berthe-Corti and C. von Ossietzky, Univ. Oldenburg, T9
NCBI tax ID(s): 64988 (species)
version 8.1 (current version)
General
@ref: 4633
BacDive-ID: 392
DSM-Number: 12178
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Alcanivorax jadensis T9 is a mesophilic bacterium that was isolated from continous culture inoculated with material from mud flats.
NCBI tax id
- NCBI tax id: 64988
- Matching level: species
strain history
- @ref: 4633
- history: <- L. Berthe-Corti and C. von Ossietzky, Univ. Oldenburg, T9
doi: 10.13145/bacdive392.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Alcanivoracaceae
- genus: Alcanivorax
- species: Alcanivorax jadensis
- full scientific name: Alcanivorax jadensis (Bruns and Berthe-Corti 1999) Fernández-Martínez et al. 2003
synonyms
- @ref: 20215
- synonym: Fundibacter jadensis
@ref: 4633
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Alcanivoracaceae
genus: Alcanivorax
species: Alcanivorax jadensis
full scientific name: Alcanivorax jadensis (Bruns and Berthe-Corti 1999) Fernández-Martínez et al. 2003
strain designation: T9
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4633
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l Na acetate 10.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 4633
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 4633
- sample type: continous culture inoculated with material from mud flats
- geographic location: North Sea Coast, Jadebusen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioreactor | |
| #Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_696.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15837;96_250;97_273;98_304;99_696&stattab=map
- Last taxonomy: Alcanivorax sp.
- 16S sequence: AJ001150
- Sequence Identity:
- Total samples: 972
- soil counts: 11
- aquatic counts: 947
- animal counts: 14
Safety information
risk assessment
- @ref: 4633
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4633
- description: Fundibacter jadensis 16S rRNA gene
- accession: AJ001150
- length: 1499
- database: ena
- NCBI tax ID: 1177181
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Alcanivorax jadensis T9 | GCA_000756655 | contig | ncbi | 1177181 |
| 66792 | Alcanivorax jadensis T9 | 1177181.3 | wgs | patric | 1177181 |
| 66792 | Alcanivorax jadensis T9 | 2600255029 | draft | img | 1177181 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 67.095 | no |
| gram-positive | no | 98.805 | no |
| anaerobic | no | 99.282 | no |
| aerobic | yes | 93.079 | no |
| halophile | yes | 90.617 | no |
| spore-forming | no | 97.031 | no |
| flagellated | no | 72.372 | no |
| thermophile | no | 99.594 | no |
| glucose-util | no | 76.518 | no |
| glucose-ferment | no | 91.53 | no |
External links
@ref: 4633
culture collection no.: DSM 12178
straininfo link
- @ref: 70072
- straininfo: 46258
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10319463 | Fundibacter jadensis gen. nov., sp. nov., a new slightly halophilic bacterium, isolated from intertidal sediment. | Bruns A, Berthe-Corti L | Int J Syst Bacteriol | 10.1099/00207713-49-2-441 | 1999 | Alkanes/metabolism, Base Composition, Biodegradation, Environmental, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Gram-Negative Aerobic Bacteria/chemistry/*classification/isolation & purification/physiology, Molecular Sequence Data, North Sea, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/metabolism, *Water Microbiology | Metabolism |
| Phylogeny | 12656192 | Description of Alcanivorax venustensis sp. nov. and reclassification of Fundibacter jadensis DSM 1 21 78T (Bruns and Berthe-Corti 1999) as Alcanivorax jadensis comb. nov., members of the emended genus Alcanivorax. | Fernandez-Martinez J, Pujalte MJ, Garcia-Martinez J, Mata M, Garay E, Rodriguez-Valera F | Int J Syst Evol Microbiol | 10.1099/ijs.0.01923-0 | 2003 | Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Ecosystem, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/isolation & purification, Mediterranean Sea, Microscopy, Electron, Scanning, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Species Specificity, Terminology as Topic | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4633 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12178) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12178 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 70072 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46258.1 | StrainInfo: A central database for resolving microbial strain identifiers |