Alcanivorax jadensis (DSM 12178, T9)

Name: Alcanivorax jadensis (DSM 12178, T9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 392

Type strain

Strain Designation T9

Culture col. no. DSM 12178 T9

NCBI tax ID(s) 64988

Special Collections DSMZ

Links

Alcanivorax jadensis T9 is a mesophilic prokaryote that was isolated from continous culture inoculated with material from mud flats.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 46258

ATCC 700854,CECT 5356,NCIMB 13860,DSM 12178

@ref 20215

Last LPSN update 2025-12-16 09:46:51

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Alcanivoracaceae

Genus Alcanivorax

Species Alcanivorax jadensis

Full scientific name Alcanivorax jadensis (Bruns and Berthe-Corti 1999) Fernández-Martínez et al. 2003

Synonyms (1)

Fundibacter jadensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.47
125439	negative	99.7
125439		90.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4633	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l Na acetate 10.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4633	positive	growth	25	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		94.312
125439		99.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioreactor	-
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4633	continous culture inoculated with material from mud flats	North Sea Coast, Jadebusen	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ001150 (>99% sequence identity) for Alcanivorax sp. from Microbeatlas

Aquatic Samples	947
Soil Samples	11
Animal Samples	14
Plant Samples
Total Samples	972

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4633	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM75665v1 assembly for Alcanivorax jadensis T9	contig	GCA_000756655	1177181.3	2600255029	1177181	72.75

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4633	Fundibacter jadensis 16S rRNA gene	AJ001150	1499		1177181

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alcanivorax jadensis T9
NCBI: GCA_000756655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	90.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	56.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alcanivorax jadensis T9
PATRIC: 1177181.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.47	no
125438	anaerobic	anaerobicⓘ	no	94.65	no
125438	spore-forming	spore-formingⓘ	no	94.31	no
125438	aerobic	aerobicⓘ	yes	82.23	no
125438	thermophilic	thermophileⓘ	no	97.78	no
125438	flagellated	motile2+ⓘ	yes	56.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Rapid Colonisation of Plastic Surfaces by Marine Alcanivorax Bacteria Is Flagellum-Dependent and Influenced by Polymer Type and Photo-Weathering State.	Davidov K, Itzahri S, Kartha A, Orr G, Lang Z, Navon-Venezia S, Oren M.	Environ Microbiol	10.1111/1462-2920.70102	2025
Metabolism	Analysis of lipid export in hydrocarbonoclastic bacteria of the genus Alcanivorax: identification of lipid export-negative mutants of Alcanivorax borkumensis SK2 and Alcanivorax jadensis T9.	Manilla-Perez E, Reers C, Baumgart M, Hetzler S, Reichelt R, Malkus U, Kalscheuer R, Waltermann M, Steinbuchel A.	J Bacteriol	10.1128/jb.00700-09	2010
Metabolism	Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria.	Kalscheuer R, Stoveken T, Malkus U, Reichelt R, Golyshin PN, Sabirova JS, Ferrer M, Timmis KN, Steinbuchel A.	J Bacteriol	10.1128/jb.01292-06	2007
Phylogeny	Description of Alcanivorax venustensis sp. nov. and reclassification of Fundibacter jadensis DSM 1 21 78T (Bruns and Berthe-Corti 1999) as Alcanivorax jadensis comb. nov., members of the emended genus Alcanivorax.	Fernandez-Martinez J, Pujalte MJ, Garcia-Martinez J, Mata M, Garay E, Rodriguez-Valera F	Int J Syst Evol Microbiol	10.1099/ijs.0.01923-0	2003
Phylogeny	Fundibacter jadensis gen. nov., sp. nov., a new slightly halophilic bacterium, isolated from intertidal sediment.	Bruns A, Berthe-Corti L	Int J Syst Bacteriol	10.1099/00207713-49-2-441	1999

References

#4633	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12178
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Alcanivorax jadensis (DSM 12178, T9)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000756655

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media