Strain identifier
BacDive ID: 3848
Type strain: 
Species: Deinococcus grandis
Strain Designation: KS 0460
Strain history: H. Oyaizu KS 0460.
NCBI tax ID(s): 57498 (species)
version 8.1 (current version)
General
@ref: 1533
BacDive-ID: 3848
DSM-Number: 3964
keywords: Bacteria, mesophilic
description: Deinococcus grandis KS 0460 is a mesophilic bacterium that was isolated from faeces of Elephas maximus.
NCBI tax id
- NCBI tax id: 57498
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1533 | <- E. Stackebrandt <- H. Oyaizu, KS 0460 |
| 67770 | H. Oyaizu KS 0460. |
doi: 10.13145/bacdive3848.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus grandis
- full scientific name: Deinococcus grandis (Oyaizu et al. 1987) Rainey et al. 1997
synonyms
- @ref: 20215
- synonym: Deinobacter grandis
@ref: 1533
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus grandis
full scientific name: Deinococcus grandis (Oyaizu et al. 1987) Rainey et al. 1997
strain designation: KS 0460
type strain: no
Culture and growth conditions
culture medium
- @ref: 1533
- name: PYEA MEDIUM (DSMZ Medium 364)
- growth: yes
- link: https://mediadive.dsmz.de/medium/364
- composition: Name: PYEA MEDIUM (DSMZ Medium 364) Composition: Agar 15.0 g/l Yeast extract 10.0 g/l Peptone 10.0 g/l NaCl 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1533 | positive | growth | 26 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
murein
- @ref: 1533
- murein short key: A21.01
- type: A3ß L-Orn-Gly2-3
observation
- @ref: 67770
- observation: quinones: MK-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species |
|---|---|---|
| 1533 | faeces of Elephas maximus | Elephas maximus |
| 67770 | Feces of Elephas maximus | Elephas maximus |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 1533
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 1533
- GC-content: 69.2
External links
@ref: 1533
culture collection no.: DSM 3964, IAM 13006, JCM 6270, CCM 3998
straininfo link
- @ref: 73358
- straininfo: 45156
literature
- topic: Genetics
- Pubmed-ID: 28775794
- title: High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.
- authors: Matrosova VY, Gaidamakova EK, Makarova KS, Grichenko O, Klimenkova P, Volpe RP, Tkavc R, Ertem G, Conze IH, Brambilla E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Daligault H, Davenport K, Erkkila T, Goodwin LA, Gu W, Munk C, Teshima H, Xu Y, Chain P, Woolbert M, Gunde-Cimerman N, Wolf YI, Grebenc T, Gostincar C, Daly MJ
- journal: Stand Genomic Sci
- DOI: 10.1186/s40793-017-0258-y
- year: 2017
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1533 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3964) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3964 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 73358 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45156.1 | StrainInfo: A central database for resolving microbial strain identifiers |