Strain identifier

BacDive ID: 320

Type strain: Yes

Species: Achromobacter piechaudii

Strain Designation: 366-5

Strain history: CIP <- 1960, R. Hugh: strain 366-5, Alcaligenes faecalis

NCBI tax ID(s): 1216977 (strain), 72556 (species)

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General

@ref: 3912

BacDive-ID: 320

DSM-Number: 10342

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Achromobacter piechaudii 366-5 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from pharyngeal swab.

NCBI tax id

NCBI tax idMatching level
1216977strain
72556species

strain history

@refhistory
3912<- CIP <- R. Hugh; 366-5
67770IAM 12591 <-- CIP 60.75 <-- R. Hugh 366-5.
121824CIP <- 1960, R. Hugh: strain 366-5, Alcaligenes faecalis

doi: 10.13145/bacdive320.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter piechaudii
  • full scientific name: Achromobacter piechaudii (Kiredjian et al. 1986) Yabuuchi et al. 1998

  • synonyms

    • @ref: 20215
    • synonym: Alcaligenes piechaudii

@ref: 3912

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter piechaudii

full scientific name: Achromobacter piechaudii (Kiredjian et al. 1986) Yabuuchi et al. 1998

strain designation: 366-5

type strain: yes

Morphology

cell morphology

  • @ref: 121824
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 3912
  • type of hemolysis: gamma
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3912NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36499MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121824CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
121824CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3912positivegrowth30mesophilic
36499positivegrowth30mesophilic
67770positivegrowth25mesophilic
121824positivegrowth15-37
121824nogrowth5psychrophilic
121824nogrowth41thermophilic
121824nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121824
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
121824NaClpositivegrowth0-6 %
121824NaClnogrowth8 %
121824NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
12182416947citrate+carbon source
1218244853esculin-hydrolysis
121824606565hippurate-hydrolysis
12182417632nitrate-builds gas from
12182417632nitrate+reduction
12182416301nitrite-builds gas from
12182416301nitrite-reduction
12182415792malonate-assimilation
12182417632nitrate-respiration

antibiotic resistance

  • @ref: 121824
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12182435581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testmethylred-test
6836935581indole-
12182417234glucose-

enzymes

@refvalueactivityec
3912catalase+1.11.1.6
3912cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
121824oxidase+
121824beta-galactosidase-3.2.1.23
121824alcohol dehydrogenase-1.1.1.1
121824gelatinase-
121824amylase-
121824DNase-
121824caseinase-3.4.21.50
121824catalase+1.11.1.6
121824tween esterase-
121824gamma-glutamyltransferase+2.3.2.2
121824lecithinase-
121824lipase-
121824lysine decarboxylase-4.1.1.18
121824ornithine decarboxylase-4.1.1.17
121824phenylalanine ammonia-lyase-4.3.1.24
121824protease-
121824tryptophan deaminase-
121824urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121824-++--+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
3912+-------------+++++++
3912+-------------++++++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121824---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
3912pharyngeal swabParisFranceFRAEurope
67770Pharyngeal swabFranceFRAEurope
121824Human, Pharyngeal swabParisFranceFRAEurope1956

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Swab
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
39122Risk group (German classification)
1218241Risk group (French classification)

Sequence information

16S sequences

  • @ref: 3912
  • description: Achromobacter piechaudii gene for 16S rRNA, partial sequence
  • accession: AB010841
  • length: 1321
  • database: ena
  • NCBI tax ID: 72556

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter piechaudii NBRC 1024611216977.3wgspatric1216977
66792Achromobacter piechaudii strain LMG 187372556.17wgspatric72556
66792Achromobacter piechaudii NBRC 1024612681812971draftimg1216977
67770Achromobacter piechaudii NBRC 102461GCA_001571245contigncbi1216977
67770Achromobacter piechaudii LMG 1873GCA_902859685contigncbi72556

GC content

  • @ref: 67770
  • GC-content: 65
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.128no
gram-positiveno98.505no
anaerobicno98.155no
aerobicyes83.522no
halophileno90.864no
spore-formingno94.829no
thermophileno99.335yes
glucose-utilno69.652yes
flagellatedno70.654no
glucose-fermentno90.839yes

External links

@ref: 3912

culture collection no.: DSM 10342, ATCC 43552, CIP 60.75, IAM 12591, LMG 1873, JCM 20668, CGMCC 1.10399, NBRC 102461, NCTC 11970, CCUG 724, NBIMCC 557, Hugh 366-5

straininfo link

  • @ref: 70001
  • straininfo: 92106

literature

  • topic: Phylogeny
  • Pubmed-ID: 9688077
  • title: Emendation of genus Achromobacter and Achromobacter xylosoxidans (Yabuuchi and Yano) and proposal of Achromobacter ruhlandii (Packer and Vishniac) comb. nov., Achromobacter piechaudii (Kiredjian et al.) comb. nov., and Achromobacter xylosoxidans subsp. denitrificans (Ruger and Tan) comb. nov.
  • authors: Yabuuchi E, Kawamura Y, Kosako Y, Ezaki T
  • journal: Microbiol Immunol
  • DOI: 10.1111/j.1348-0421.1998.tb02306.x
  • year: 1998
  • mesh: Alcaligenes/*classification/genetics, Bacterial Typing Techniques, Bordetella/classification, DNA, Bacterial/analysis/chemistry, Humans, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Terminology as Topic
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitle
3912Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10342)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10342
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36499Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9894
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
70001Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92106.1StrainInfo: A central database for resolving microbial strain identifiers
121824Curators of the CIPCollection of Institut Pasteur (CIP 60.75)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2060.75