Strain identifier

BacDive ID: 305

Type strain: No

Species: Achromobacter xylosoxidans subsp. xylosoxidans

Strain history: <- CCUG <- A. Makristathis

NCBI tax ID(s): 85698 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9 (current version):
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9 (current version)

General

@ref: 18159

BacDive-ID: 305

DSM-Number: 26089

keywords: 16S sequence, Bacteria

description: Achromobacter xylosoxidans subsp. xylosoxidans DSM 26089 is a bacterium that was isolated from human sputum of a cystic fibrosis patient.

NCBI tax id

  • NCBI tax id: 85698
  • Matching level: species

strain history

  • @ref: 18159
  • history: <- CCUG <- A. Makristathis

doi: 10.13145/bacdive305.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter xylosoxidans subsp. xylosoxidans
  • full scientific name: Achromobacter xylosoxidans subsp. xylosoxidans (Yabuuchi and Yano 1981 ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

  • synonyms

    • @ref: 20215
    • synonym: Alcaligenes xylosoxidans subsp. xylosoxidans

@ref: 18159

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter xylosoxidans subsp. xylosoxidans

full scientific name: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

type strain: no

Morphology

colony morphology

  • @ref: 18159
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18159COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
18159CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
18159positivegrowth37
18159positivegrowth30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
18159catalase+1.11.1.6
18159cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    56680C12:00.512
    56680C13:00.313
    56680C14:07.714
    56680C15:06.415
    56680C16:023.716
    56680C17:00.717
    56680C10:0 3OH0.211.423
    56680C12:0 2OH2.213.178
    56680C12:0 3OH0.313.455
    56680C14:0 2OH1.415.205
    56680C14:0 3OH/C16:1 ISO I515.485
    56680C14:1 ω5c0.513.899
    56680C15:0 ISO 3OH1.616.135
    56680C15:1 ω6c414.856
    56680C16:1 ω5c0.215.908
    56680C16:1 ω7c33.715.819
    56680C17:0 CYCLO3.316.888
    56680C17:1 ω8c0.116.792
    56680C18:1 ω7c /12t/9t4.317.824
    56680Unidentified0.714.281
    56680Unidentified0.315.166
    56680Unidentified0.415.288
    56680Unidentified1.616.294
    56680Unidentified0.517.706
    56680Unidentified0.318.134
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
56680--+--+--------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
18159--------+-----+++++++
56680--------+-----+++++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
18159human sputum of a cystic fibrosis patientWienAustriaAUTEurope
56680Human sputum,cystic fibrosisWienAustriaAUTEurope2001-04-01

isolation source categories

Cat1Cat2Cat3
#Infection#Disease#Cystic fibrosis
#Infection#Patient
#Host#Human
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

  • @ref: 18159
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: Achromobacter xylosoxidans partial 16S rRNA gene, strain CCUG 45179
  • accession: HG423408
  • length: 444
  • database: nuccore
  • NCBI tax ID: 85698

External links

@ref: 18159

culture collection no.: DSM 26089, CCUG 45179

straininfo link

  • @ref: 69987
  • straininfo: 110298

Reference

@idauthorscataloguedoi/urltitle
18159Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26089)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26089
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
56680Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 45179)https://www.ccug.se/strain?id=45179
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69987Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID110298.1StrainInfo: A central database for resolving microbial strain identifiers
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy