Strain identifier

BacDive ID: 2959

Type strain: Yes

Species: Giesbergeria sinuosa

Strain history: CIP <- 1963, NCIB <- M.A. Williams, Spirillum sinuosum

NCBI tax ID(s): 80883 (species)

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General

@ref: 4418

BacDive-ID: 2959

DSM-Number: 11556

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Giesbergeria sinuosa DSM 11556 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Environment, Fresh water.

NCBI tax id

  • NCBI tax id: 80883
  • Matching level: species

strain history

@refhistory
4418<- ATCC <- NCIB <- O. B. Williams (Spirillum sinuosum) <- I. Lewis (Spirillum undula)
67770IAM 14978 <-- IFO 14925 <-- Y. Terasaki <-- ATCC 9786 <-- NCIB 9010 <-- M. A. Williams <-- I. M. Lewis.
122635CIP <- 1963, NCIB <- M.A. Williams, Spirillum sinuosum

doi: 10.13145/bacdive2959.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Giesbergeria
  • species: Giesbergeria sinuosa
  • full scientific name: Giesbergeria sinuosa (Williams and Rittenberg 1957) Grabovich et al. 2006

  • synonyms

    @refsynonym
    20215Aquaspirillum sinuosum
    20215Spirillum sinuosum

@ref: 4418

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Giesbergeria

species: Giesbergeria sinuosa

full scientific name: Giesbergeria sinuosa (Williams and Rittenberg 1957) Grabovich et al. 2006

type strain: yes

Morphology

cell morphology

  • @ref: 122635
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 58563
  • incubation period: 3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4418ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)yeshttps://mediadive.dsmz.de/medium/7Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
4418NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37609MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genusyesDistilled water make up to (1000.000 ml);Agar (13.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Beef extract (3.000 g)
122635CIP Medium 14yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=14

culture temp

@refgrowthtypetemperaturerange
4418positivegrowth30mesophilic
37609positivegrowth25mesophilic
58563positivegrowth30mesophilic
67770positivegrowth30mesophilic
122635positivegrowth15-30
122635nogrowth5psychrophilic
122635nogrowth37mesophilic
122635nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58563
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
122635NaClpositivegrowth0 %
122635NaClnogrowth2 %
122635NaClnogrowth4 %
122635NaClnogrowth6 %
122635NaClnogrowth8 %
122635NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
122635citrate-carbon source16947
122635esculin-hydrolysis4853
122635glucose-fermentation17234
122635lactose-fermentation17716
122635nitrate-reduction17632
122635nitrite-reduction16301
122635sodium thiosulfate-builds gas from132112

antibiotic resistance

  • @ref: 122635
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 122635
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12263515688acetoin-
12263517234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
122635oxidase+
122635beta-galactosidase-3.2.1.23
122635alcohol dehydrogenase-1.1.1.1
122635gelatinase-
122635amylase-
122635DNase-
122635caseinase-3.4.21.50
122635catalase+1.11.1.6
122635tween esterase-
122635gamma-glutamyltransferase-2.3.2.2
122635lecithinase-
122635lipase-
122635lysine decarboxylase-4.1.1.18
122635ornithine decarboxylase-4.1.1.17
122635phenylalanine ammonia-lyase-4.3.1.24
122635protease-
122635tryptophan deaminase-
122635urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122635-++--+----++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122635--+/---------------------+/--------+/-----------------+/-

Isolation, sampling and environmental information

isolation

  • @ref: 122635
  • sample type: Environment, Fresh water

taxonmaps

  • @ref: 69479
  • File name: preview.99_30964.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_9748;97_11746;98_17657;99_30964&stattab=map
  • Last taxonomy: Giesbergeria
  • 16S sequence: AF078754
  • Sequence Identity:
  • Total samples: 318
  • soil counts: 10
  • aquatic counts: 272
  • animal counts: 29
  • plant counts: 7

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
44181Risk group (German classification)
1226351Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aquaspirillum sinuosum 16S ribosomal RNA gene, partial sequenceAF0787541491ena80883
20218Giesbergeria sinuosa gene for 16S rRNA, partial sequence, strain: NBRC 14925AB6807111458ena80883

External links

@ref: 4418

culture collection no.: DSM 11556, ATCC 9786, NCIB 9010, NRRL B-2065, CCUG 49452, IAM 14978, LMG 4393, JCM 21449, CIP 63.18, IFO 14925, NBRC 14925, NCIMB 9010, NCMB 59, CCUG 13728, NRRL: B-2065

straininfo link

  • @ref: 72481
  • straininfo: 909

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4418Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11556)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11556
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37609Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10024
58563Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 49452)https://www.ccug.se/strain?id=49452
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72481Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID909.1StrainInfo: A central database for resolving microbial strain identifiers
122635Curators of the CIPCollection of Institut Pasteur (CIP 63.18)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2063.18