Strain identifier

BacDive ID: 2947

Type strain: No

Species: Delftia acidovorans

Strain Designation: 4B

Strain history: <- ICPB <- IAM <- M. Yano, 4B (Pseudomonas desmolytica)

NCBI tax ID(s): 80866 (species)

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General

@ref: 12609

BacDive-ID: 2947

DSM-Number: 50053

keywords: Bacteria, human pathogen

description: Delftia acidovorans 4B is a human pathogen that was isolated from soil, enrichment with p-hydroxybenzoate.

NCBI tax id

  • NCBI tax id: 80866
  • Matching level: species

strain history

  • @ref: 12609
  • history: <- ICPB <- IAM <- M. Yano, 4B (Pseudomonas desmolytica)

doi: 10.13145/bacdive2947.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Delftia
  • species: Delftia acidovorans
  • full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999

  • synonyms

    @refsynonym
    20215Pseudomonas acidovorans
    20215Comamonas acidovorans

@ref: 12609

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Delftia

species: Delftia acidovorans

full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999

strain designation: 4B

type strain: no

Culture and growth conditions

culture medium

  • @ref: 12609
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 12609
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46229--++-+--------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
46229+----------+--+++++++

Isolation, sampling and environmental information

isolation

  • @ref: 12609
  • sample type: soil, enrichment with p-hydroxybenzoate

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 12609
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

  • @ref: 12609
  • GC-content: 68.4
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 12609

culture collection no.: DSM 50053, ATCC 17406, ICPB 2701-24, CCUG 15340, LMG 1790

straininfo link

  • @ref: 72469
  • straininfo: 1995

Reference

@idauthorscataloguedoi/urltitle
12609Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50053)https://www.dsmz.de/collection/catalogue/details/culture/DSM-50053
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
46229Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15340)https://www.ccug.se/strain?id=15340
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
72469Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1995.1StrainInfo: A central database for resolving microbial strain identifiers