Strain identifier

BacDive ID: 2939

Type strain: Yes

Species: Curvibacter delicatus

Strain Designation: 146

Strain history: CIP <- 2001, NCIMB <- ATCC <- E. Leifson, Spirillum delicatum: strain 146

NCBI tax ID(s): 1349763 (strain), 80879 (species)

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General

@ref: 4420

BacDive-ID: 2939

DSM-Number: 11558

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Curvibacter delicatus 146 is an aerobe, mesophilic, motile bacterium that was isolated from distilled water.

NCBI tax id

NCBI tax idMatching level
1349763strain
80879species

strain history

@refhistory
4420<- ATCC <- E. Leifson, 146 (Spirillum delicatum)
67770LMG 4328 <-- ATCC 14667 <-- E. Leifson 146.
118886CIP <- 2001, NCIMB <- ATCC <- E. Leifson, Spirillum delicatum: strain 146

doi: 10.13145/bacdive2939.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Curvibacter
  • species: Curvibacter delicatus
  • full scientific name: Curvibacter delicatus (Leifson 1962) Ding and Yokota 2004

  • synonyms

    @refsynonym
    20215Aquaspirillum delicatum
    20215Spirillum delicatum

@ref: 4420

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Curvibacter

species: Curvibacter delicatus

full scientific name: Curvibacter delicatus (Leifson 1962) Ding and Yokota 2004

strain designation: 146

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes91.743
69480100negative
118886yespositive

colony morphology

  • @ref: 46362
  • incubation period: 3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4420HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)yeshttps://mediadive.dsmz.de/medium/428Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water
4420SPIRILLUM MEDIUM (DSMZ Medium 37)yeshttps://mediadive.dsmz.de/medium/37Name: SPIRILLUM MEDIUM (DSMZ Medium 37) Composition: Peptone 10.0 g/l (NH4)2SO4 1.0 g/l Succinic acid 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeCl3 x 6 H2O 0.002 g/l MnSO4 x H2O 0.002 g/l Distilled water
33763MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genusyesDistilled water make up to (1000.000 ml);Agar (13.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Beef extract (3.000 g)
118886CIP Medium 14yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=14
118886CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
4420positivegrowth30mesophilic
33763positivegrowth25mesophilic
46362positivegrowth30mesophilic
67770positivegrowth25mesophilic
118886positivegrowth22-37
118886nogrowth5psychrophilic
118886nogrowth15psychrophilic
118886nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46362
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
118886NaClpositivegrowth0 %
118886NaClnogrowth2 %
118886NaClnogrowth4 %
118886NaClnogrowth6 %
118886NaClnogrowth8 %
118886NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11888616947citrate-carbon source
1188864853esculin-hydrolysis
11888617234glucose-fermentation
11888617716lactose-fermentation
11888617632nitrate+reduction
11888616301nitrite-reduction
118886132112sodium thiosulfate-builds gas from
11888617234glucose-degradation

antibiotic resistance

  • @ref: 118886
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 118886
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11888615688acetoin-
11888617234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
118886oxidase-
118886beta-galactosidase-3.2.1.23
118886alcohol dehydrogenase-1.1.1.1
118886gelatinase-
118886catalase-1.11.1.6
118886gamma-glutamyltransferase-2.3.2.2
118886lysine decarboxylase-4.1.1.18
118886ornithine decarboxylase-4.1.1.17
118886phenylalanine ammonia-lyase-4.3.1.24
118886tryptophan deaminase-
118886urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118886-+++------++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
4420distilled waterCaliforniaUSAUSANorth America
46362Water,distilledCalifornia,DavisUSAUSANorth America
67770Distilled waterCAUSAUSANorth America
118886Environment, Distilled water sampleCaliforniaUnited States of AmericaUSANorth America1959

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Engineered#Industrial#Engineered product
#Engineered#Treatment#Sterilized (Desinfected)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2622.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_269;97_297;98_2030;99_2622&stattab=map
  • Last taxonomy: Rhodoferax
  • 16S sequence: AF078756
  • Sequence Identity:
  • Total samples: 693
  • soil counts: 84
  • aquatic counts: 471
  • animal counts: 107
  • plant counts: 31

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
44201Risk group (German classification)
1188861Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aquaspirillum delicatum 16S ribosomal RNA gene, partial sequenceAF0787561495ena80879
20218Curvibacter delicatus gene for 16S rRNA, partial sequence, strain: NBRC 14919AB6807051460ena80879

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Curvibacter delicatus NBRC 149191349763.3wgspatric1349763
66792Curvibacter delicatus NBRC 149192731957686draftimg1349763
67770Curvibacter delicatus NBRC 14919GCA_001592265contigncbi1349763

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes86.028no
gram-positiveno98.676no
anaerobicno97.929yes
halophileno96.894no
spore-formingno94.631no
glucose-utilno78.92no
aerobicyes85.82yes
flagellatedyes74.317no
thermophileno97.206yes
glucose-fermentno90.662no

External links

@ref: 4420

culture collection no.: DSM 11558, ATCC 14667, CCUG 15846, LMG 4328, LMG 4327, IAM 14955, NBRC 14919, JCM 15147, BCRC 80545, IFO 14919, JCM 21432, CIP 107314, NCIMB 9419

straininfo link

  • @ref: 72461
  • straininfo: 10236

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19671731Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake.Hahn MW, Kasalicky V, Jezbera J, Brandt U, Jezberova J, Simek KInt J Syst Evol Microbiol10.1099/ijs.0.013292-02009Amino Acids/analysis, Betaproteobacteria/classification/*genetics/isolation & purification/metabolism, Fresh Water/microbiology, Microscopy, Electron, Molecular Sequence Data, Monosaccharides/analysis, Phenotype, Phylogeny, Phytoplankton/classification/genetics/*isolation & purification/metabolism, Sucrose/analysis, Temperature, *Water MicrobiologyEnzymology
Phylogeny23124758Caenimonas terrae sp. nov., isolated from a soil sample in Korea, and emended description of the genus Caenimonas Ryu et al. 2008.Kim SJ, Weon HY, Kim YS, Moon JY, Seok SJ, Hong SB, Kwon SWJ Microbiol10.1007/s12275-012-1587-62012Base Composition, Comamonadaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil MicrobiologyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4420Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11558)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11558
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33763Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4736
46362Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15846)https://www.ccug.se/strain?id=15846
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72461Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID10236.1StrainInfo: A central database for resolving microbial strain identifiers
118886Curators of the CIPCollection of Institut Pasteur (CIP 107314)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107314