Strain identifier

BacDive ID: 2757

Type strain: Yes

Species: Terrisporobacter mayombei

Strain Designation: SFC-5

Strain history: <- J. Breznak, SFC-5

NCBI tax ID(s): 1541 (species)

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General

@ref: 2723

BacDive-ID: 2757

DSM-Number: 6539

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Terrisporobacter mayombei SFC-5 is an anaerobe, mesophilic bacterium that was isolated from gut, termite Cubitermes sp..

NCBI tax id

  • NCBI tax id: 1541
  • Matching level: species

strain history

  • @ref: 2723
  • history: <- J. Breznak, SFC-5

doi: 10.13145/bacdive2757.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Terrisporobacter
  • species: Terrisporobacter mayombei
  • full scientific name: Terrisporobacter mayombei (Kane et al. 1992) Gerritsen et al. 2014

  • synonyms

    • @ref: 20215
    • synonym: Clostridium mayombei

@ref: 2723

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Terrisporobacter

species: Terrisporobacter mayombei

full scientific name: Terrisporobacter mayombei (Kane et al. 1992) Gerritsen et al. 2014

strain designation: SFC-5

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2723
  • name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/311c
  • composition: Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c; with strain-specific modifications) Composition: NaCl 2.23881 g/l D-Glucose 1.99005 g/l Casitone 1.99005 g/l Yeast extract 1.99005 g/l Na2CO3 0.995025 g/l MgSO4 x 7 H2O 0.497512 g/l NH4Cl 0.497512 g/l K2HPO4 0.348259 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l DL-Dithiothreitol 0.149254 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l Sodium resazurin 0.000497512 g/l NaOH 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

culture temp

  • @ref: 2723
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2723
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2723
  • sample type: gut, termite Cubitermes sp.
  • host species: Cubitermes
  • geographic location: Mayombe rainforest, Peoples
  • country: Republic of the Congo
  • origin.country: COG
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract#Stomach

taxonmaps

  • @ref: 69479
  • File name: preview.99_2.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_2;97_2;98_2;99_2&stattab=map
  • Last taxonomy: Terrisporobacter
  • 16S sequence: FR733682
  • Sequence Identity:
  • Total samples: 26442
  • soil counts: 572
  • aquatic counts: 843
  • animal counts: 24867
  • plant counts: 160

Safety information

risk assessment

  • @ref: 2723
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2723
  • description: Clostridium mayombei partial 16S rRNA gene, type strain DSM6539T
  • accession: FR733682
  • length: 1494
  • database: ena
  • NCBI tax ID: 1541

Genome sequences

  • @ref: 66792
  • description: Terrisporobacter mayombei DSM 6539
  • accession: GCA_020748465
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1541

GC content

  • @ref: 2723
  • GC-content: 25.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno55.922no
gram-positiveyes80.212no
anaerobicyes99.044yes
aerobicno98.866yes
halophileno91.048no
spore-formingyes93.865no
motileyes79.097no
thermophileno96.163yes
glucose-utilyes87.326no
glucose-fermentyes62.074no

External links

@ref: 2723

culture collection no.: DSM 6539, ATCC 51428

straininfo link

  • @ref: 72287
  • straininfo: 42979

literature

  • topic: Phylogeny
  • Pubmed-ID: 26297478
  • title: Terrisporobacter petrolearius sp. nov., isolated from an oilfield petroleum reservoir.
  • authors: Deng Y, Guo X, Wang Y, He M, Ma K, Wang H, Chen X, Kong D, Yang Z, Ruan Z
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000450
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, China, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oil and Gas Fields/*microbiology, Petroleum/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
2723Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6539)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6539
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72287Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42979.1StrainInfo: A central database for resolving microbial strain identifiers