Name: Terrisporobacter mayombei SFC-5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2757

Type strain:

Species: Terrisporobacter mayombei

Strain Designation: SFC-5

Culture col. no.: DSM 6539, ATCC 51428

Strain history: <- J. Breznak, SFC-5

NCBI tax ID(s): 1541 (species)

SI-ID 42979

ATCC 51428, DSM 6539

Special Collections

DSMZ

Other strains from Terrisporobacter mayombei

Section

Terrisporobacter mayombei SFC-5 is an anaerobe, spore-forming bacterium that was isolated from gut, termite Cubitermes sp..

spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Terrisporobacter*
	Species	**Terrisporobacter mayombei**
	Full Scientific Name (LPSN)	Terrisporobacter mayombei (Kane et al. 1992) Gerritsen et al. 2014

Synonym

Clostridium mayombei

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2723]

Culture medium

SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)

[Ref.: #2723]

Culture medium growth

[Ref.: #2723]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2723]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2723]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2723]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2723]	Sample type/isolated from	gut, termite Cubitermes sp.
[Ref.: #2723]	Host species	Cubitermes
[Ref.: #2723]	Geographic location (country and/or sea, region)	Mayombe rainforest, Peoples
[Ref.: #2723]	Country	Republic of the Congo
[Ref.: #2723]	Country ISO 3 Code	COG
[Ref.: #2723]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733682 (>99% sequence identity) for Terrisporobacter from Microbeatlas

Aquatic Samples	843
Soil Samples	572
Animal Samples	24867
Plant Samples	160
Total Samples	26442

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2723]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2723]	Clostridium mayombei partial 16S rRNA gene, type strain DSM6539T	FR733682	1494	GenBank ENA	1541 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Terrisporobacter mayombei DSM 6539	GCA_020748465	contig	GenBank ENA	1541 tax ID	*

[Ref.: #2723]

GC-content

25.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Terrisporobacter mayombei DSM 6539 NCBI: GCA_020748465.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	54.096	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	85.865	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.128	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	66.812	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.265	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	76.141	no

Availability in culture collections External links

[Ref.: #2723]

Culture collection no.

DSM 6539, ATCC 51428

[Ref.: #72287]

SI-ID 42979

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrisporobacter petrolearius sp. nov., isolated from an oilfield petroleum reservoir.	Deng Y, Guo X, Wang Y, He M, Ma K, Wang H, Chen X, Kong D, Yang Z, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000450	2015	*

References

#2723

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6539

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72287

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42979.1 )

* These data were automatically processed and therefore are not curated

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Terrisporobacter mayombei DSM 6539

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