Strain identifier

BacDive ID: 2747

Type strain: Yes

Species: Clostridium novyi

Strain Designation: 151

Strain history: ATCC 17861 <-- L. S. McClung 151.

NCBI tax ID(s): 1542 (species)

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General

@ref: 5659

BacDive-ID: 2747

DSM-Number: 14992

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Clostridium novyi 151 is an anaerobe, mesophilic human pathogen of the family Clostridiaceae.

NCBI tax id

  • NCBI tax id: 1542
  • Matching level: species

strain history

@refhistory
5659<- JCM; JCM 1406 <- ATCC; ATCC 17861 <- L. S. McClung; 151
67770ATCC 17861 <-- L. S. McClung 151.

doi: 10.13145/bacdive2747.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium novyi
  • full scientific name: Clostridium novyi (Migula 1900) Bergey et al. 1923 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus novyi

@ref: 5659

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium novyi

full scientific name: Clostridium novyi (Migula 1894) Bergey et al. 1923

strain designation: 151

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5659CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
5659FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1203a.pdf
5659COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

@refgrowthtypetemperaturerange
5659positivegrowth37mesophilic
61246positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5659anaerobe
61246anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
5659-----+/-----------+/-------------

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_1974.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_477;97_545;98_716;99_1974&stattab=map
  • Last taxonomy: Clostridium novyi
  • 16S sequence: L37594
  • Sequence Identity:
  • Total samples: 3664
  • soil counts: 330
  • aquatic counts: 461
  • animal counts: 2811
  • plant counts: 62

Safety information

risk assessment

  • @ref: 5659
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium novyi genes for 16S rRNA, 16S-23S rRNA spacer region (rrn1), 23S rRNA, partial sequenceAB040722268ena1542
20218Clostridium novyi genes for 16S rRNA, tRNA-Ala, tRNA-Ile, 23S rRNA, partial and complete sequenceAB040723460ena1542
20218Clostridium novyi genes for 16S rRNA, tRNA-Ala, tRNA-Ile, 23S rRNA, partial and complete sequenceAB040724505ena1542
20218Clostridium novyi gene for 16S rRNA, partial sequenceAB0456061465ena1542
20218Clostridium novyi 16S ribosomal RNA (16S rRNA) geneL375941452ena1542
20218Clostridium novyi 16S ribosomal RNAM591001458ena1542
5659Clostridium novyi gene for 16S ribosomal RNA, partial sequence, strain: JCM 1406AB5367721474ena1542

External links

@ref: 5659

culture collection no.: DSM 14992, ATCC 17861, JCM 1406, CCUG 57219, NCTC 13029, NCIMB 10661

straininfo link

  • @ref: 72277
  • straininfo: 44534

literature

  • topic: Phylogeny
  • Pubmed-ID: 16585678
  • title: Clostridium ganghwense sp. nov., isolated from tidal flat sediment.
  • authors: Kim S, Jeong H, Kim S, Chun J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63791-0
  • year: 2006
  • mesh: Clostridium/classification/cytology/*isolation & purification/physiology, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Spores, Bacterial/cytology, *Water Microbiology
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5659Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14992)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14992
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
61246Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57219)https://www.ccug.se/strain?id=57219
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72277Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44534.1StrainInfo: A central database for resolving microbial strain identifiers