We are hiring!

Strain identifier

BacDive ID: 2733

Type strain: Yes

Species: Thermoclostridium stercorarium subsp. thermolacticum

Strain Designation: TX41

Strain history: <- P. Le Ruyet and H. C. Dubourguier, Station de Technologie Alimentaire, Villeneuve D'Ascq, France; TX41 <- P. Le Ruyet {1982}

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 7.1 (current version)

General

@ref: 1243

BacDive-ID: 2733

DSM-Number: 2910

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic

description: Thermoclostridium stercorarium subsp. thermolacticum TX41 is an anaerobe, thermophilic bacterium that was isolated from mesophilic digester fed with Lemna minor.

NCBI tax id

NCBI tax idMatching level
29351subspecies
1121336strain

strain history: <- P. Le Ruyet and H. C. Dubourguier, Station de Technologie Alimentaire, Villeneuve D'Ascq, France; TX41 <- P. Le Ruyet {1982}

doi: 10.13145/bacdive2733.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Thermoclostridium
  • species: Thermoclostridium stercorarium subsp. thermolacticum
  • full scientific name: Thermoclostridium stercorarium subsp. thermolacticum (Le Ruyet et al. 1988) Zhang et al. 2018
  • synonyms

    @refsynonym
    20215Clostridium stercorarium subsp. thermolacticum
    20215Clostridium thermolacticum

@ref: 1243

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Oscillospiraceae

genus: Thermoclostridium

species: Thermoclostridium stercorarium subsp. thermolacticum

full scientific name: Thermoclostridium stercorarium subsp. thermolacticum (Le Ruyet et al. 1988) Zhang et al. 2018

strain designation: TX41

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 73.59

Culture and growth conditions

culture medium

  • @ref: 1243
  • name: THERMOCLOSTRIDIUM (A-GÖ) MEDIUM (DSMZ Medium 326)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/326
  • composition: Name: THERMOCLOSTRIDIUM (A-GÖ) MEDIUM (DSMZ Medium 326) Composition: Sucrose 4.99002 g/l KH2PO4 3.29341 g/l Yeast extract 1.99601 g/l Trypticase peptone 1.99601 g/l Na2CO3 0.998004 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l MgCl2 x 6 H2O 0.159681 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Nicotinic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerangeconfidence
1243positivegrowth60thermophilic
69480thermophilic99.999

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1243anaerobe
69480anaerobe98.559

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 62.319

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 99.5

Isolation, sampling and environmental information

isolation

  • @ref: 1243
  • sample type: mesophilic digester fed with Lemna minor
  • host species: Lemna minor
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation
#Host#Plants#Aquatic plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_1650.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_246;96_941;97_1095;98_1306;99_1650&stattab=map
  • Last taxonomy: Thermoclostridium stercorarium subclade
  • 16S sequence: X72870
  • Sequence Identity:
  • Total samples: 6000
  • soil counts: 1258
  • aquatic counts: 584
  • animal counts: 3737
  • plant counts: 421

Safety information

risk assessment

  • @ref: 1243
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1243
  • description: C.thermolacticum gene for 16S rRNA
  • accession: X72870
  • length: 1517
  • database: ena
  • NCBI tax ID: 1121336

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 DSM 2910GCA_001697245completencbi1121336
66792[Clostridium] stercorarium subsp. thermolacticum DSM 29101121336.3completepatric1121336
66792Mycobacterium marinum MMA1GCA_016745295completepatric1781

GC content

  • @ref: 1243
  • GC-content: 40.9

External links

@ref: 1243

culture collection no.: DSM 2910, ATCC 43739

straininfo link

@refpassport
20218http://www.straininfo.net/strains/113076
20218http://www.straininfo.net/strains/113075

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism10784299Anaerobic thermophilic fermentation for acetic acid production from milk permeate.Talabardon M, Schwitzguebel JP, Peringer PJ Biotechnol10.1016/s0168-1656(99)00180-72000Acetic Acid/*metabolism, Anaerobiosis, Animals, Bioreactors, Biotechnology, Clostridium/metabolism, Fermentation, Lactose/metabolism, Milk/*metabolismBiotechnology
Metabolism11760953Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.Chamkha M, Garcia JL, Labat MInt J Syst Evol Microbiol10.1099/00207713-51-6-21052001Bacterial Typing Techniques, Cinnamates/*metabolism, Clostridium/*classification/growth & development/*metabolism, Culture Media, Glucose/metabolismCultivation

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1243Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2910)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2910
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)