Name: Thermoclostridium stercorarium subsp. thermolacticum TX41
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2733

Type strain:

Species: Thermoclostridium stercorarium subsp. thermolacticum

Strain Designation: TX41

Culture col. no.: DSM 2910, ATCC 43739

Strain history: <- P. Le Ruyet and H. C. Dubourguier, Station de Technologie Alimentaire, Villeneuve D'Ascq, France; TX41 <- P. Le Ruyet {1982}

NCBI tax ID(s): 1121336 (strain), 29351 (subspecies)

SI-ID 42014

ATCC 43739, DSM 2910, BCRC 16160, CCRC 16160

Other strains from Thermoclostridium stercorarium subsp. thermolacticum

T. stercorarium subsp. thermolacticum DSM 2911, TC 21, JCM 9324, ATCC ...

Section

Thermoclostridium stercorarium subsp. thermolacticum TX41 is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from mesophilic digester fed with Lemna minor.

Gram-positive
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Thermoclostridium*
	Species	**Thermoclostridium stercorarium subsp. thermolacticum**
	Full Scientific Name (LPSN)	Thermoclostridium stercorarium subsp. thermolacticum (Le Ruyet et al. 1988) Zhang et al. 2018

	Synonym	Clostridium stercorarium subsp. thermolacticum
	Synonym	Clostridium thermolacticum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.72

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1243]

Culture medium

THERMOCLOSTRIDIUM (A-GÖ) MEDIUM (DSMZ Medium 326)

[Ref.: #1243]

Culture medium growth

[Ref.: #1243]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1243]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1243]			growth	60 °C

[Ref.: #1243]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.627

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1243]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1243]	Sample type/isolated from	mesophilic digester fed with Lemna minor
[Ref.: #1243]	Host species	Lemna minor
[Ref.: #1243]	Country	France
[Ref.: #1243]	Country ISO 3 Code	FRA
[Ref.: #1243]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	-
#Host	#Plants	#Aquatic plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X72870 (>99% sequence identity) for Thermoclostridium stercorarium subclade from Microbeatlas

Aquatic Samples	584
Soil Samples	1258
Animal Samples	3737
Plant Samples	421
Total Samples	6000

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1243]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1243]	C.thermolacticum gene for 16S rRNA	X72870	1517	ENA	1121336 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermoclostridium stercorarium subsp. thermolacticum DSM 2910	GCA_001697245	complete	GenBank	1121336 tax ID	*
[Ref.: #66792]	[Clostridium] stercorarium subsp. thermolacticum DSM 2910	1121336.3	complete	PATRIC	1121336 tax ID	*

[Ref.: #1243]

GC-content

40.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 DSM 2910 NCBI: GCA_001697245.1
[Ref.: #69481]	spore-forming	no	72	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 DSM 2910 NCBI: GCA_001697245.1
[Ref.: #69480]	flagellated	no	78.802	no
[Ref.: #69480]	gram-positive	yes	68.262	no
[Ref.: #69480]	anaerobic	yes	99.003	yes
[Ref.: #69480]	halophile	no	93.815	no
[Ref.: #69480]	spore-forming	yes	86.805	no
[Ref.: #69480]	glucose-util	yes	88.682	no
[Ref.: #69480]	aerobic	no	98.39	no
[Ref.: #69480]	thermophile	yes	99.681	no
[Ref.: #69480]	motile	yes	72.366	no
[Ref.: #69480]	glucose-ferment	no	51.236	no

Availability in culture collections External links

[Ref.: #1243]

Culture collection no.

DSM 2910, ATCC 43739

[Ref.: #72262]

SI-ID 42014

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.	Chamkha M, Garcia JL, Labat M	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2105	2001	*
Metabolism	Anaerobic thermophilic fermentation for acetic acid production from milk permeate.	Talabardon M, Schwitzguebel JP, Peringer P	J Biotechnol	10.1016/s0168-1656(99)00180-7	2000	*

References

#1243

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2910

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72262

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42014.1 )

* These data were automatically processed and therefore are not curated

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Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 DSM 2910

Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 DSM 2910

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