Thermoclostridium stercorarium subsp. thermolacticum (DSM 2910, ATCC 43739, TX41)

Name: Thermoclostridium stercorarium subsp. thermolacticum (DSM 2910, ATCC 43739, TX41)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2733

Type strain

Strain Designation TX41

Culture col. no. DSM 2910 ATCC 43739 TX41

NCBI tax ID(s) 1121336 29351

Special Collections DSMZ

History DSMZ <- P. Le Ruyet and H. C. Dubourguier, Station de Technologie Alimentaire, Villeneuve D'Ascq, France; TX41 <- P. Le Ruyet {1982}

Links

Thermoclostridium stercorarium subsp. thermolacticum TX41 is an anaerobe bacterium that was isolated from mesophilic digester fed with Lemna minor.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42014

ATCC 43739,DSM 2910,BCRC 16160,CCRC 16160

@ref 20215

Last LPSN update 2026-05-29 08:25:32

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Thermoclostridium

Species Thermoclostridium stercorarium subsp. thermolacticum

Full scientific name Thermoclostridium stercorarium subsp. thermolacticum (Le Ruyet et al. 1988) Zhang et al. 2018

Synonyms (2)

Clostridium thermolacticum
Clostridium stercorarium subsp. thermolacticum

BacDive ID	Other strains from **Thermoclostridium stercorarium subsp. thermolacticum** (1)	Type strain
2734	T. stercorarium subsp. thermolacticum DSM 2911, TC 21, JCM 9324, ATCC 43738

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1243	THERMOCLOSTRIDIUM (A-GÖ) MEDIUM (DSMZ Medium 326)		Medium recipe at MediaDive	Name: THERMOCLOSTRIDIUM (A-GÖ) MEDIUM (DSMZ Medium 326) Composition: Sucrose 4.99002 g/l KH2PO4 3.29341 g/l Yeast extract 1.99601 g/l Trypticase peptone 1.99601 g/l Na2CO3 0.998004 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l MgCl2 x 6 H2O 0.159681 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Nicotinic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1243	positive	growth	60

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
1243	anaerobe
125438	anaerobe	93.003
125439	facultative anaerobe	96.737

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	-
#Host	#Plants	#Aquatic plant

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
1243	mesophilic digester fed with Lemna minor	Lemna minor	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence X72870 (>99% sequence identity) for Thermoclostridium stercorarium subclade from Microbeatlas

Aquatic Samples	584
Soil Samples	1258
Animal Samples	3737
Plant Samples	421
Total Samples	6000

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1243	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM169724v1 assembly for Thermoclostridium stercorarium subsp. thermolacticum DSM 2910	complete	GCA_001697245	1121336.3	1121336	95.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
1243	C.thermolacticum gene for 16S rRNA	X72870	1517		1121336

GC content

1243

GC-content (mol%)40.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM169724v1 assembly for Thermoclostridium stercorarium subsp. thermolacticum DSM 2910
BV-BRC: 1121336.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.74	no
125439	gram_stain	BacteriaNetⓘ	variable	72.75	no
125439	motility	BacteriaNetⓘ	yes	79.70	no
125439	spore_formation	BacteriaNetⓘ	yes	80.95	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 DSM 2910
NCBI: GCA_001697245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.70	no
125438	anaerobic	anaerobicⓘ	yes	93.00	yes
125438	aerobic	aerobicⓘ	no	97.19	no
125438	spore-forming	spore-formingⓘ	yes	69.48	no
125438	thermophilic	thermophileⓘ	yes	71.09	yes
125438	flagellated	motile2+ⓘ	yes	75.12	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Recombinant expression and characterization of an alpha-galactosidase from Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 and its application in the hydrolysis of raffinose.	Ge L, Jia R, Liu Y, Zhan L.	Carbohydr Res	10.1016/j.carres.2025.109410	2025
	Heterologous Expression and Characterization of a Thermostable alpha-L-Rhamnosidase from Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 and Its Application in the Biotransformation of Rutin.	Ge L, Liu Y, Zhou F, Zhan L, Zhao L.	J Microbiol Biotechnol	10.4014/jmb.2305.05032	2023
Metabolism	Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.	Chamkha M, Garcia JL, Labat M	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2105	2001
Metabolism	Anaerobic thermophilic fermentation for acetic acid production from milk permeate.	Talabardon M, Schwitzguebel JP, Peringer P	J Biotechnol	10.1016/s0168-1656(99)00180-7	2000

References

#1243	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2910
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Thermoclostridium stercorarium subsp. thermolacticum (DSM 2910, ATCC 43739, TX41)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001697245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media