Strain identifier
BacDive ID: 2724
Type strain: 
Species: Clostridium tertium
Strain Designation: 795
Strain history: T. Mitsuoka <-- ATCC 14573 <-- J. D. MacLennan <-- L. McClung <-- R. Spray.
NCBI tax ID(s): 1559 (species)
version 8.1 (current version)
General
@ref: 1094
BacDive-ID: 2724
DSM-Number: 2485
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen
description: Clostridium tertium 795 is an anaerobe, mesophilic human pathogen of the family Clostridiaceae.
NCBI tax id
- NCBI tax id: 1559
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1094 | <- NCIB <- G. Hobbs; 795 |
| 67770 | T. Mitsuoka <-- ATCC 14573 <-- J. D. MacLennan <-- L. McClung <-- R. Spray. |
doi: 10.13145/bacdive2724.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium tertium
- full scientific name: Clostridium tertium (Henry 1917) Bergey et al. 1923 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus tertius
@ref: 1094
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium tertium
full scientific name: Clostridium tertium (Henry 1917) Bergey et al. 1923
strain designation: 795
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1094 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | yes | https://mediadive.dsmz.de/medium/110 | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
| 1094 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1094 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 1094
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_3264.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1253;97_2035;98_2501;99_3264&stattab=map
- Last taxonomy: Clostridium tertium
- 16S sequence: Y18174
- Sequence Identity:
- Total samples: 7812
- soil counts: 574
- aquatic counts: 386
- animal counts: 6806
- plant counts: 46
Safety information
risk assessment
- @ref: 1094
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium tertium (ATCC 14573) 16S rRNA gene | AJ245413 | 1415 | ena | 1559 |
| 20218 | Clostridium tertium strain DSM 2485 16S ribosomal RNA gene, partial sequence | HM245930 | 842 | ena | 1559 |
| 20218 | Clostridium tertium gene for 16S ribosomal RNA, partial cds, strain: JCM 6289 | AB618789 | 1477 | ena | 1559 |
| 1094 | Clostridium tertium 16S rRNA gene, partial, strain DSM 2485 | Y18174 | 1479 | ena | 1559 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium tertium DSM 2485 | GCA_017873245 | contig | ncbi | 1559 |
| 66792 | Clostridium tertium strain DSM 2485 | 1559.80 | wgs | patric | 1559 |
| 66792 | Clostridium tertium DSM 2485 | 2913329792 | draft | img | 1559 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 1094 | 28.0 | |
| 67770 | 24 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 87.786 | no |
| gram-positive | yes | 83.383 | no |
| anaerobic | yes | 96.846 | yes |
| aerobic | no | 98.016 | yes |
| halophile | no | 91.545 | no |
| spore-forming | yes | 95.016 | no |
| thermophile | no | 94.842 | no |
| glucose-util | yes | 90.417 | no |
| flagellated | yes | 61.254 | no |
| glucose-ferment | yes | 68.924 | no |
External links
@ref: 1094
culture collection no.: DSM 2485, ATCC 14573, IAM 14196, NCIB 10697, JCM 6289, CCUG 4219, NBRC 103192, NCIMB 10697, NCIMB 541
straininfo link
- @ref: 72252
- straininfo: 265725
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1094 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2485) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2485 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72252 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265725.1 | StrainInfo: A central database for resolving microbial strain identifiers |