Strain identifier
BacDive ID: 2716
Type strain: 
Species: Faecalispora sporosphaeroides
Strain history: <- ATCC; ATCC 25781 <- L. DS. Smith, Virginia Polytechnical Institute and State University (VPI), Blacksburg, V., USA; VPI 4527
NCBI tax ID(s): 1549 (species)
version 9.3 (current version)
General
@ref: 625
BacDive-ID: 2716
DSM-Number: 1294
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Faecalispora sporosphaeroides DSM 1294 is an anaerobe, mesophilic bacterium that was isolated from Infected wound.
NCBI tax id
- NCBI tax id: 1549
- Matching level: species
strain history
- @ref: 625
- history: <- ATCC; ATCC 25781 <- L. DS. Smith, Virginia Polytechnical Institute and State University (VPI), Blacksburg, V., USA; VPI 4527
doi: 10.13145/bacdive2716.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Faecalispora
- species: Faecalispora sporosphaeroides
- full scientific name: Faecalispora sporosphaeroides (Soriano and Soriano 1948) Rios-Galicia et al. 2024
synonyms
- @ref: 20215
- synonym: Clostridium sporosphaeroides
@ref: 625
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sporosphaeroides
full scientific name: Clostridium sporosphaeroides Soriano and Soriano 1948
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 625 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
| 625 | PY + X MEDIUM (DSMZ Medium 104b) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium104b.pdf |
culture temp
- @ref: 625
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 625
- oxygen tolerance: anaerobe
compound production
- @ref: 625
- compound: citrate lyase
Isolation, sampling and environmental information
isolation
- @ref: 625
- sample type: Infected wound
Safety information
risk assessment
- @ref: 625
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | C.sporosphaeroides 16S rRNA | X66002 | 1400 | nuccore | 1549 |
| 625 | Clostridium sporosphaeroides 16S ribosomal RNA | M59116 | 1460 | nuccore | 1549 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | [Clostridium] sporosphaeroides DSM 1294 VPI 4527 | GCA_000383295 | scaffold | ncbi | 1121334 |
| 66792 | Clostridium sporosphaeroides DSM 1294 | 1121334.3 | wgs | patric | 1121334 |
| 66792 | Clostridium sporosphaeroides DSM 1294 | 2519899647 | draft | img | 1121334 |
GC content
- @ref: 625
- GC-content: 27.0
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 57.013 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 88.437 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 98.49 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 53.469 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.559 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 64.266 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 66.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 55.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 81.2 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate anaerobe | 80.2 |
External links
@ref: 625
culture collection no.: DSM 1294, ATCC 25781, NCIB 10672, VPI 4527, NCIMB 10672
straininfo link
- @ref: 72244
- straininfo: 125562
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 20721546 | Production of hexanoic acid from D-galactitol by a newly isolated Clostridium sp. BS-1. | Jeon BS, Kim BC, Um Y, Sang BI | Appl Microbiol Biotechnol | 10.1007/s00253-010-2827-5 | 2010 | Acetic Acid/metabolism, Anaerobiosis, Base Sequence, Biofuels, Butyric Acid/metabolism, Caproates/isolation & purification/*metabolism, Clostridium/classification/genetics/isolation & purification/*metabolism, Fermentation/genetics, Galactitol/*metabolism, Genes, rRNA, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sewage, Sodium Acetate/metabolism, Water Microbiology | Phylogeny |
| Phylogeny | 26474980 | Caproiciproducens galactitolivorans gen. nov., sp. nov., a bacterium capable of producing caproic acid from galactitol, isolated from a wastewater treatment plant. | Kim BC, Seung Jeon B, Kim S, Kim H, Um Y, Sang BI | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000665 | 2015 | Bacterial Typing Techniques, Base Composition, Caproates/*metabolism, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Galactitol/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Waste Water/*microbiology | Metabolism |
| Phylogeny | 32584751 | Caproicibacter fermentans gen. nov., sp. nov., a new caproate-producing bacterium and emended description of the genus Caproiciproducens. | Flaiz M, Baur T, Brahner S, Poehlein A, Daniel R, Bengelsdorf FR | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004283 | 2020 | Bacteria, Anaerobic/classification, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, Caproates/*metabolism, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 625 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1294) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1294 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 72244 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID125562.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |