Strain identifier

BacDive ID: 2684

Type strain: No

Species: Clostridium sp.

Strain Designation: FS41

Strain history: <- H. Kaltwasser <- M. Herman, FS41

NCBI tax ID(s): 1506 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 2869

BacDive-ID: 2684

DSM-Number: 6877

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium sp. FS41 is an anaerobe, mesophilic bacterium that was isolated from sewage sludge.

NCBI tax id

  • NCBI tax id: 1506
  • Matching level: species

strain history

  • @ref: 2869
  • history: <- H. Kaltwasser <- M. Herman, FS41

doi: 10.13145/bacdive2684.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium sp.
  • full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Tyzzerella
    20215Pseudoclostridium
    20215Lachnoclostridium
    20215Anaerobacter
    20215Inflabilis

@ref: 2869

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium sp.

full scientific name: Clostridium sp.

strain designation: FS41

type strain: no

Culture and growth conditions

culture medium

  • @ref: 2869
  • name: CLOSTRIDIUM SP. MEDIUM (CREATININE) (DSMZ Medium 557)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/557
  • composition: Name: CLOSTRIDIUM SP. MEDIUM (CREATININE) (DSMZ Medium 557; with strain-specific modifications) Composition: N-methylhydantoin 6.77966 g/l K2HPO4 5.31406 g/l Yeast extract 4.98504 g/l KH2PO4 2.6321 g/l NaCl 0.997009 g/l NaHCO3 0.997009 g/l MgSO4 x 7 H2O 0.498504 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l CaSO4 x 2 H2O 0.0498504 g/l FeSO4 x 7 H2O 0.00997009 g/l Na2-EDTA x 2 H2O 0.00518445 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 2869
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2869
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2869
  • sample type: sewage sludge
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Sewage sludge

Sequence information

16S sequences

  • @ref: 20218
  • description: Clostridium sp. DSM 6877 (FS 41) 16S rRNA gene
  • accession: X76747
  • length: 1484
  • database: ena
  • NCBI tax ID: 1506

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium sp. FS41GCA_000954015contigncbi1609975
66792Clostridium sp. FS411609975.3wgspatric1609975
66792Clostridium sp. FS412603880195draftimg1609975

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes77.639no
gram-positiveyes81.594no
anaerobicyes98.215yes
aerobicno97.633no
halophileno87.241no
spore-formingyes80.671no
thermophileno98.484yes
glucose-utilyes91.213no
flagellatedno56.723no
glucose-fermentyes68.438no

External links

@ref: 2869

culture collection no.: DSM 6877

straininfo link

  • @ref: 72212
  • straininfo: 48312

literature

  • Pubmed-ID: 25931608
  • title: First Insights into the Genome of the N-Methylhydantoin-Degrading Clostridium sp. Strain FS41 (DSM 6877).
  • authors: Poehlein A, Bandera A, Horne D, Maier J, Pawlowicz D, Siebert V, Daniel R
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00394-15
  • year: 2015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2869Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6877)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6877
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
72212Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48312.1StrainInfo: A central database for resolving microbial strain identifiers