Strain identifier
BacDive ID: 2684
Type strain: 
Species: Clostridium sp.
Strain Designation: FS41
Strain history: <- H. Kaltwasser <- M. Herman, FS41
NCBI tax ID(s): 1506 (species)
version 9.3 (current version)
General
@ref: 2869
BacDive-ID: 2684
DSM-Number: 6877
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium sp. FS41 is an anaerobe, mesophilic bacterium that was isolated from sewage sludge.
NCBI tax id
- NCBI tax id: 1506
- Matching level: species
strain history
- @ref: 2869
- history: <- H. Kaltwasser <- M. Herman, FS41
doi: 10.13145/bacdive2684.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium sp.
- full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)
synonyms
@ref synonym 20215 Anaerobacter 20215 Inflabilis 20215 Tyzzerella 20215 Pseudoclostridium 20215 Lachnoclostridium
@ref: 2869
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sp.
full scientific name: Clostridium sp.
strain designation: FS41
type strain: no
Culture and growth conditions
culture medium
- @ref: 2869
- name: CLOSTRIDIUM SP. MEDIUM (CREATININE) (DSMZ Medium 557)
- growth: yes
- link: https://mediadive.dsmz.de/medium/557
- composition: Name: CLOSTRIDIUM SP. MEDIUM (CREATININE) (DSMZ Medium 557; with strain-specific modifications) Composition: N-methylhydantoin 6.77966 g/l K2HPO4 5.31406 g/l Yeast extract 4.98504 g/l KH2PO4 2.6321 g/l NaCl 0.997009 g/l NaHCO3 0.997009 g/l MgSO4 x 7 H2O 0.498504 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l CaSO4 x 2 H2O 0.0498504 g/l FeSO4 x 7 H2O 0.00997009 g/l Na2-EDTA x 2 H2O 0.00518445 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 2869
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 2869 | anaerobe | |
| 125439 | anaerobe | 99.6 |
Isolation, sampling and environmental information
isolation
- @ref: 2869
- sample type: sewage sludge
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Sewage sludge
Sequence information
16S sequences
- @ref: 20218
- description: Clostridium sp. DSM 6877 (FS 41) 16S rRNA gene
- accession: X76747
- length: 1484
- database: nuccore
- NCBI tax ID: 1506
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium sp. FS41 | GCA_000954015 | contig | ncbi | 1609975 |
| 66792 | Clostridium sp. FS41 | 1609975.3 | wgs | patric | 1609975 |
| 66792 | Clostridium sp. FS41 | 2603880195 | draft | img | 1609975 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 61.255 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 86.923 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 71.232 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.504 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.133 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 65.473 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 79.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 78.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 68.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 99.6 |
External links
@ref: 2869
culture collection no.: DSM 6877
straininfo link
- @ref: 72212
- straininfo: 48312
literature
- Pubmed-ID: 25931608
- title: First Insights into the Genome of the N-Methylhydantoin-Degrading Clostridium sp. Strain FS41 (DSM 6877).
- authors: Poehlein A, Bandera A, Horne D, Maier J, Pawlowicz D, Siebert V, Daniel R
- journal: Genome Announc
- DOI: 10.1128/genomeA.00394-15
- year: 2015
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2869 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6877) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6877 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 72212 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48312.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |