Strain identifier

BacDive ID: 2678

Type strain: No

Species: Clostridium sp.

Strain Designation: 4

Strain history: <- VKM <- V.I. Duda, 4 ("Clostridium corinoforum")

NCBI tax ID(s): 1506 (species)

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General

@ref: 2355

BacDive-ID: 2678

DSM-Number: 5906

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium sp. 4 is an anaerobe, mesophilic bacterium that was isolated from rice soil.

NCBI tax id

  • NCBI tax id: 1506
  • Matching level: species

strain history

  • @ref: 2355
  • history: <- VKM <- V.I. Duda, 4 ("Clostridium corinoforum")

doi: 10.13145/bacdive2678.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium sp.
  • full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Tyzzerella
    20215Pseudoclostridium
    20215Lachnoclostridium
    20215Anaerobacter
    20215Inflabilis

@ref: 2355

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium sp.

full scientific name: Clostridium sp.

strain designation: 4

type strain: no

Culture and growth conditions

culture medium

  • @ref: 2355
  • name: CLOSTRIDIUM (GV) MEDIUM (DSMZ Medium 500)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/500
  • composition: Name: CLOSTRIDIUM (GV) MEDIUM (DSMZ Medium 500) Composition: D-Glucose 4.97512 g/l NaHCO3 2.98507 g/l NaCl 2.23881 g/l Yeast extract 0.995025 g/l NH4Cl 0.497512 g/l MgSO4 x 7 H2O 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l MnCl2 x 4 H2O 9.95025e-05 g/l Pyridoxine hydrochloride 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

culture temp

  • @ref: 2355
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2355
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2355
  • sample type: rice soil
  • geographic location: Kuban
  • country: Russia
  • origin.country: RUS
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Sequence information

16S sequences

  • @ref: 20218
  • description: Clostridium corinoforum partial 16S rRNA gene, strain DSM 5906
  • accession: X76742
  • length: 1500
  • database: ena
  • NCBI tax ID: 36836

Genome sequences

  • @ref: 66792
  • description: Clostridium sp. 4
  • accession: 2593339124
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1485

GC content

  • @ref: 2355
  • GC-content: 35.0

External links

@ref: 2355

culture collection no.: DSM 5906, BKM B-1364, VKM B-1364

straininfo link

  • @ref: 72206
  • straininfo: 48026

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2355Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5906)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5906
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
72206Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48026.1StrainInfo: A central database for resolving microbial strain identifiers