Archive BacDiveID:10.13145/bacdive2675.20230509.8.1

Strain identifier

BacDive ID: 2675

Type strain:

Species: unclassified bacterium

Strain history: <- ATCC <- L.V. Holdeman, VPI C48-50 (Clostridium P)

NCBI tax ID(s): 1869227 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 1578

BacDive-ID: 2675

DSM-Number: 4029

keywords: genome sequence, anaerobe, mesophilic, Gram-positive

description: unclassified bacterium DSM 4029 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from human faeces.

NCBI tax id

NCBI tax id: 1869227
Matching level: species

strain history

@ref: 1578
history: <- ATCC <- L.V. Holdeman, VPI C48-50 (Clostridium P)

doi: 10.13145/bacdive2675.20230509.8.1

Name and taxonomic classification

@ref: 1578

phylum: Not assigned to order

class: Not assigned to order

order: Clostridiales

family: Not assigned to family

genus: unclassified

species: unclassified bacterium

full scientific name: unclassified bacterium

type strain: no

Morphology

cell morphology

@ref: 69480
gram stain: positive
confidence: 100

Culture and growth conditions

culture medium

@ref: 1578
name: CHOPPED MEAT MEDIUM (DSMZ Medium 78)
growth: yes
link: https://mediadive.dsmz.de/medium/78
composition: Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

culture temp

@ref: 1578
growth: positive
type: growth
temperature: 37
range: mesophilic

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance	confidence
1578	anaerobe
69480	anaerobe	98.647

spore formation

@ref: 69480
spore formation: no
confidence: 99.803

compound production

@ref	compound
1578	12alpha hydroxysteroid dehydrogenase
1578	steroids

Isolation, sampling and environmental information

isolation

@ref: 1578
sample type: human faeces
country: USA
origin.country: USA
continent: North America

isolation source categories

Cat1	Cat2	Cat3
#Host	#Human
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Bittarella massiliensis DSM 4029	GCA_900129515	contig	ncbi	1720313
66792	Clostridium sp. ATCC 29733	GCA_000466605	scaffold	ncbi	1507
66792	Clostridium sp. ATCC 29733	1507.3	wgs	patric	1507
66792	Clostridium sp. DSM 4029	1882754.4	wgs	patric	1882754
66792	Clostridium sp. DSM 4029	2695420950	draft	img	1882754

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	81	no
motile	no	92.053	no
flagellated	no	95.85	no
gram-positive	yes	92.512	no
anaerobic	yes	99.482	yes
aerobic	no	98.362	yes
halophile	no	83.974	no
spore-forming	no	78.866	no
thermophile	no	98.958	yes
glucose-util	yes	81.344	no
glucose-ferment	yes	55.347	no

External links

@ref: 1578

culture collection no.: DSM 4029, ATCC 29733, VPI C48-50

Reference

@id	authors	catalogue	doi/url	title
1578	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4029)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-4029
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)