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Strain identifier

BacDive ID: 2663

Type strain: Yes

Species: Clostridium sartagoforme

Strain history: ATCC 25778 <-- L. DS. Smith VPI 1395 <-- H. Haas.

NCBI tax ID(s): 84031 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 623

BacDive-ID: 2663

DSM-Number: 1292

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Clostridium sartagoforme DSM 1292 is an anaerobe, mesophilic human pathogen that was isolated from garden soil.

NCBI tax id

  • NCBI tax id: 84031
  • Matching level: species

strain history

doi: 10.13145/bacdive2663.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium sartagoforme
  • full scientific name: Clostridium sartagoforme corrig. Partansky and Henry 1935 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Clostridium sartagoformum

@ref: 623

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium sartagoforme

full scientific name: Clostridium sartagoforme Partansky and Henry 1935

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 81.745

Culture and growth conditions

culture medium

  • @ref: 623
  • name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/110
  • composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
623positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
623anaerobe
69480anaerobe98.3

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 62.478

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.195

Isolation, sampling and environmental information

isolation

  • @ref: 623
  • sample type: garden soil

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Garden

taxonmaps

  • @ref: 69479
  • File name: preview.99_5152.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1253;97_2035;98_2501;99_5152&stattab=map
  • Last taxonomy: Clostridium sartagoforme
  • 16S sequence: Y18175
  • Sequence Identity:
  • Total samples: 5976
  • soil counts: 486
  • aquatic counts: 363
  • animal counts: 5022
  • plant counts: 105

Safety information

risk assessment

  • @ref: 623
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
623Clostridium sartagoformum 16S rRNA gene, partial, strain DSM 129Y181751470ena84031
67770Clostridium sartagoforme gene for 16S ribosomal RNA, partial sequence, strain: JCM 1413AB9717961477ena84031

GC content

@refGC-contentmethod
62328.0
6777028thermal denaturation, midpoint method (Tm)

External links

@ref: 623

culture collection no.: DSM 1292, ATCC 25778, NCIB 10668, NCIMB 10668, VPI 3195, JCM 1413, BCRC 14538, KCTC 5186, VPI 1395

straininfo link

@refpassport
20218http://www.straininfo.net/strains/157241
20218http://www.straininfo.net/strains/104558
20218http://www.straininfo.net/strains/104560

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
623Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1292)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1292
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)