Strain identifier
BacDive ID: 2663
Type strain: 
Species: Clostridium sartagoforme
Strain history: ATCC 25778 <-- L. DS. Smith VPI 1395 <-- H. Haas.
NCBI tax ID(s): 84031 (species)
version 7.1 (current version)
General
@ref: 623
BacDive-ID: 2663
DSM-Number: 1292
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen
description: Clostridium sartagoforme DSM 1292 is an anaerobe, mesophilic human pathogen that was isolated from garden soil.
NCBI tax id
- NCBI tax id: 84031
- Matching level: species
strain history
doi: 10.13145/bacdive2663.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium sartagoforme
- full scientific name: Clostridium sartagoforme corrig. Partansky and Henry 1935 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium sartagoformum
@ref: 623
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sartagoforme
full scientific name: Clostridium sartagoforme Partansky and Henry 1935
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 81.745
Culture and growth conditions
culture medium
- @ref: 623
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 623 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 623 | anaerobe | |
| 69480 | anaerobe | 98.3 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 62.478
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 98.195
Isolation, sampling and environmental information
isolation
- @ref: 623
- sample type: garden soil
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Garden |
taxonmaps
- @ref: 69479
- File name: preview.99_5152.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1253;97_2035;98_2501;99_5152&stattab=map
- Last taxonomy: Clostridium sartagoforme
- 16S sequence: Y18175
- Sequence Identity:
- Total samples: 5976
- soil counts: 486
- aquatic counts: 363
- animal counts: 5022
- plant counts: 105
Safety information
risk assessment
- @ref: 623
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 623 | Clostridium sartagoformum 16S rRNA gene, partial, strain DSM 129 | Y18175 | 1470 | ena | 84031 |
| 67770 | Clostridium sartagoforme gene for 16S ribosomal RNA, partial sequence, strain: JCM 1413 | AB971796 | 1477 | ena | 84031 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 623 | 28.0 | |
| 67770 | 28 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 623
culture collection no.: DSM 1292, ATCC 25778, NCIB 10668, NCIMB 10668, VPI 3195, JCM 1413, BCRC 14538, KCTC 5186, VPI 1395
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/157241 |
| 20218 | http://www.straininfo.net/strains/104558 |
| 20218 | http://www.straininfo.net/strains/104560 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 623 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1292) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1292 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |