Strain identifier
BacDive ID: 2663
Type strain: 
Species: Clostridium sartagoforme
Strain history: ATCC 25778 <-- L. DS. Smith VPI 1395 <-- H. Haas.
NCBI tax ID(s): 84031 (species)
version 8.1 (current version)
General
@ref: 623
BacDive-ID: 2663
DSM-Number: 1292
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen
description: Clostridium sartagoforme DSM 1292 is an anaerobe, mesophilic human pathogen that was isolated from garden soil.
NCBI tax id
- NCBI tax id: 84031
- Matching level: species
strain history
| @ref | history |
|---|---|
| 623 | <- ATCC <- L. DS. Smith, Virginia Polytechnical Institute and State University, Blacksburg, V., USA; VPI 3195 |
| 67770 | ATCC 25778 <-- L. DS. Smith VPI 1395 <-- H. Haas. |
doi: 10.13145/bacdive2663.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium sartagoforme
- full scientific name: Clostridium sartagoforme corrig. Partansky and Henry 1935 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium sartagoformum
@ref: 623
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sartagoforme
full scientific name: Clostridium sartagoforme Partansky and Henry 1935
type strain: yes
Culture and growth conditions
culture medium
- @ref: 623
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 623 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 623
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 623
- sample type: garden soil
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Garden |
taxonmaps
- @ref: 69479
- File name: preview.99_5152.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1253;97_2035;98_2501;99_5152&stattab=map
- Last taxonomy: Clostridium sartagoforme
- 16S sequence: Y18175
- Sequence Identity:
- Total samples: 5976
- soil counts: 486
- aquatic counts: 363
- animal counts: 5022
- plant counts: 105
Safety information
risk assessment
- @ref: 623
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 623 | Clostridium sartagoformum 16S rRNA gene, partial, strain DSM 129 | Y18175 | 1470 | ena | 84031 |
| 67770 | Clostridium sartagoforme gene for 16S ribosomal RNA, partial sequence, strain: JCM 1413 | AB971796 | 1477 | ena | 84031 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 623 | 28.0 | |
| 67770 | 28 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 623
culture collection no.: DSM 1292, ATCC 25778, NCIB 10668, NCIMB 10668, VPI 3195, JCM 1413, BCRC 14538, KCTC 5186, VPI 1395
straininfo link
- @ref: 72192
- straininfo: 38665
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 623 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1292) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1292 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72192 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38665.1 | StrainInfo: A central database for resolving microbial strain identifiers |