Clostridium sartagoforme (DSM 1292, ATCC 25778, NCIB 10668)

Name: Clostridium sartagoforme (DSM 1292, ATCC 25778, NCIB 10668)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2663

Type strain

Culture col. no. DSM 1292 ATCC 25778 NCIB 10668 NCIMB 10668 VPI 3195 4 more

NCBI tax ID(s) 84031

Special Collections DSMZ JCM KCTC

History <- ATCC; ATCC 25778 <- L. DS. Smith, Virginia Polytechnical Institute and State University, Blacksburg, V., USA; VPI 3195 <- H. Haas; ATCC 25778 <-- L. DS. Smith VPI 1395 <-- H. Haas.

Links

Clostridium sartagoforme DSM 1292 is an anaerobe, mesophilic prokaryote that was isolated from garden soil.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 38665

ATCC 25778,NCIB 10668,DSM 1292,JCM 1413,CCRC 14538,NCIMB 10668,BCRC 14538,KCTC 5186

@ref 20215

Last LPSN update 2025-12-16 09:47:22

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium sartagoforme

Full scientific name Clostridium sartagoforme corrig. Partansky and Henry 1935 (Approved Lists 1980)

Synonyms (1)

Clostridium sartagoformum

BacDive ID	Other strains from **Clostridium sartagoforme** (3)	Type strain
2664	C. sartagoforme ID 99-1260A, R4-K1, DSM 17125
144315	C. sartagoforme CCUG 24540
145585	C. sartagoforme CCUG 28872

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
623	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
623	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

623

Oxygen toleranceanaerobe

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	metabolism of amino sugars and derivatives	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ribulose monophosphate pathway	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	pyrimidine metabolism	86.67	39 of 45
66794	purine metabolism	80.85	76 of 94
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycine betaine biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	glycolysis	76.47	13 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	pentose phosphate pathway	72.73	8 of 11
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	phenylalanine metabolism	69.23	9 of 13
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	octane oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	lipid metabolism	64.52	20 of 31
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	non-pathway related	63.16	24 of 38
66794	alanine metabolism	62.07	18 of 29
66794	methionine metabolism	61.54	16 of 26
66794	factor 420 biosynthesis	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	oxidative phosphorylation	59.34	54 of 91
66794	tryptophan metabolism	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	molybdenum cofactor biosynthesis	55.56	5 of 9
66794	d-xylose degradation	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	urea cycle	53.85	7 of 13
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	cysteine metabolism	50	9 of 18
66794	phenylmercury acetate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	citric acid cycle	50	7 of 14
66794	glutathione metabolism	50	7 of 14
66794	ketogluconate metabolism	50	4 of 8
66794	vitamin E metabolism	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	leucine metabolism	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	proline metabolism	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	nitrate assimilation	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	tyrosine metabolism	42.86	6 of 14
66794	arachidonate biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	arachidonic acid metabolism	38.89	7 of 18
66794	degradation of hexoses	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	vitamin B12 metabolism	38.24	13 of 34
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	cyanate degradation	33.33	1 of 3
66794	flavin biosynthesis	33.33	5 of 15
66794	degradation of pentoses	32.14	9 of 28
66794	ascorbate metabolism	31.82	7 of 22
66794	degradation of sugar alcohols	31.25	5 of 16
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

Isolation

623

Sample typegarden soil

Taxonmaps

69479

Global distribution of 16S sequence Y18175 (>99% sequence identity) for Clostridium sartagoforme from Microbeatlas

Aquatic Samples	363
Soil Samples	486
Animal Samples	5022
Plant Samples	105
Total Samples	5976

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
623	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952140v1 assembly for Clostridium sartagoforme JCM 1413	scaffold	GCA_039521405	84031	67.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
623	Clostridium sartagoformum 16S rRNA gene, partial, strain DSM 129	Y18175	1470		84031
67770	Clostridium sartagoforme gene for 16S ribosomal RNA, partial sequence, strain: JCM 1413	AB971796	1477		84031

GC content

@ref	GC-content (mol%)	Method
623	28.0
67770	28	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	The Impact of Allicin on the Growth of Clostridium spp. in the Digestive Track of Quails.	Makuch A, Ziomek M, Sapala M, Drabik K, Batkowska J, Domaradzki P, Patyra E, Grenda T.	Animals (Basel)	10.3390/ani15070906	2025
Genetics	Characterization of the resistome and antibiotic-resistant bacteria in top soil improvers and irrigation waters devoted to food production: a case study from Italy.	Gigliucci F, Barbieri G, Veyrunes M, Chiani P, Marra M, Carollo M, Knijn A, Brambilla G, Morabito S.	Environ Sci Pollut Res Int	10.1007/s11356-025-36438-9	2025
	Identification of Hydrogen Gas Producing Anaerobic Bacteria Isolated from Sago Industrial Effluent.	Nizzy AM, Kannan S, Anand SB.	Curr Microbiol	10.1007/s00284-020-02092-2	2020
	Random guide-independent DNA cleavage from the Argonaute of Exiguobacterium sp. AB2.	Caniza MAM, Dy RLV.	BMC Microbiol	10.1186/s12866-025-04159-1	2025
	Isolation, identification, and biological characteristics of Clostridium sartagoforme from rabbit.	Gong R, Ye X, Wang S, Ren Z.	PLoS One	10.1371/journal.pone.0259715	2021
Genetics	Role of Gut Microbiota in Statin-Associated New-Onset Diabetes-A Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort.	Koponen K, Kambur O, Joseph B, Ruuskanen MO, Jousilahti P, Salido R, Brennan C, Jain M, Meric G, Inouye M, Lahti L, Niiranen T, Havulinna AS, Knight R, Salomaa V.	Arterioscler Thromb Vasc Biol	10.1161/atvbaha.123.319458	2024
Phylogeny	Unraveling the distinctive gut microbiome of khulans (Equus hemionus hemionus) in comparison to their drinking water and closely related equids.	Jarquin-Diaz VH, Dayaram A, Soilemetzidou ES, Desvars-Larrive A, Bohner J, Buuveibaatar B, Kaczensky P, Walzer C, Greenwood AD, Lober U.	Sci Rep	10.1038/s41598-025-87216-z	2025
	Microbial community dynamics in blood, faeces and oral secretions of neotropical bats in Casanare, Colombia.	Luna N, Paez-Triana L, Ramirez AL, Munoz M, Gomez M, Medina JE, Urbano P, Barragan K, Ariza C, Martinez D, Hernandez C, Patino LH, Ramirez JD.	Sci Rep	10.1038/s41598-024-77090-6	2024
	Probiotics alleviate constipation and inflammation in late gestating and lactating sows.	Ma T, Huang W, Li Y, Jin H, Kwok LY, Sun Z, Zhang H.	NPJ Biofilms Microbiomes	10.1038/s41522-023-00434-z	2023
Metabolism	Culture dependent and independent analyses suggest a low level of sharing of endospore-forming species between mothers and their children.	Avershina E, Larsen MG, Aspholm M, Lindback T, Storro O, Oien T, Johnsen R, Rudi K.	Sci Rep	10.1038/s41598-020-58858-y	2020
	Genetic diversity and amplification of different clostridial [FeFe] hydrogenases by group-specific degenerate primers.	Calusinska M, Joris B, Wilmotte A.	Lett Appl Microbiol	10.1111/j.1472-765x.2011.03135.x	2011
	PandaGUT provides new insights into bacterial diversity, function, and resistome landscapes with implications for conservation.	Huang G, Shi W, Wang L, Qu Q, Zuo Z, Wang J, Zhao F, Wei F.	Microbiome	10.1186/s40168-023-01657-0	2023
Genetics	Taxonogenomic description of four new Clostridium species isolated from human gut: 'Clostridium amazonitimonense', 'Clostridium merdae', 'Clostridium massilidielmoense' and 'Clostridium nigeriense'.	Alou MT, Ndongo S, Fregere L, Labas N, Andrieu C, Richez M, Couderc C, Baudoin JP, Abrahao J, Brah S, Diallo A, Sokhna C, Cassir N, La Scola B, Cadoret F, Raoult D.	New Microbes New Infect	10.1016/j.nmni.2017.11.003	2018
	Efficient Bioelectrochemical Conversion of Industrial Wastewater by Specific Strain Isolation and Community Adaptation.	Brunner S, Klessing T, Dotsch A, Sturm-Richter K, Gescher J.	Front Bioeng Biotechnol	10.3389/fbioe.2019.00023	2019
Transcriptome	Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line.	Wang K, Gao P, Geng L, Liu C, Zhang J, Shu C.	Microbiome	10.1186/s40168-022-01291-2	2022
	Effects of Intranasal Pseudorabies Virus AH02LA Infection on Microbial Community and Immune Status in the Ileum and Colon of Piglets.	Zhang C, Liu Y, Chen S, Qiao Y, Zheng Y, Xu M, Wang Z, Hou J, Wang J, Fan H.	Viruses	10.3390/v11060518	2019
	Enhancement of Textural and Sensory Characteristics of Wheat Bread Using a Chickpea Sourdough Fermented with a Selected Autochthonous Microorganism.	Nouska C, Hatzikamari M, Matsakidou A, Biliaderis CG, Lazaridou A.	Foods	10.3390/foods12163112	2023
	Acids produced by lactobacilli inhibit the growth of commensal Lachnospiraceae and S24-7 bacteria.	Brownlie EJE, Chaharlangi D, Wong EO, Kim D, Navarre WW.	Gut Microbes	10.1080/19490976.2022.2046452	2022
	Significant non-existence of sequences in genomes and proteomes.	Koulouras G, Frith MC.	Nucleic Acids Res	10.1093/nar/gkab139	2021
Enzymology	Chitinolytic bacteria of the mammal digestive tract.	Simunek J, Hodrova B, Bartonova H, Kopecny J.	Folia Microbiol (Praha)	10.1007/bf02825892	2001
Phylogeny	Age-Related Differences in the Luminal and Mucosa-Associated Gut Microbiome of Broiler Chickens and Shifts Associated with Campylobacter jejuni Infection.	Awad WA, Mann E, Dzieciol M, Hess C, Schmitz-Esser S, Wagner M, Hess M.	Front Cell Infect Microbiol	10.3389/fcimb.2016.00154	2016
	The adherence-associated Fdp fasciclin I domain protein of the biohydrogen producer Rhodobacter sphaeroides is regulated by the global Prr pathway.	Jeong EL, Broad SJ, Moody RG, Phillips-Jones MK.	Int J Hydrogen Energy	10.1016/j.ijhydene.2020.07.108	2020
	The bamboo-eating giant panda harbors a carnivore-like gut microbiota, with excessive seasonal variations.	Xue Z, Zhang W, Wang L, Hou R, Zhang M, Fei L, Zhang X, Huang H, Bridgewater LC, Jiang Y, Jiang C, Zhao L, Pang X, Zhang Z.	mBio	10.1128/mbio.00022-15	2015
Enzymology	Novel highly thermostable endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119 with amino acid sequence similarity to eukaryotic peptidoglycan recognition proteins.	Plotka M, Kaczorowska AK, Stefanska A, Morzywolek A, Fridjonsson OH, Dunin-Horkawicz S, Kozlowski L, Hreggvidsson GO, Kristjansson JK, Dabrowski S, Bujnicki JM, Kaczorowski T.	Appl Environ Microbiol	10.1128/aem.03074-13	2014

References

#623	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1292
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium sartagoforme (DSM 1292, ATCC 25778, NCIB 10668)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039521405

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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