Strain identifier
BacDive ID: 2596
Type strain: 
Species: Terrisporobacter glycolicus
Strain history: ATCC 14880 <-- L. W. Gaton.
NCBI tax ID(s): 36841 (species)
version 9.3 (current version)
General
@ref: 608
BacDive-ID: 2596
DSM-Number: 1288
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Terrisporobacter glycolicus DSM 1288 is an anaerobe, mesophilic bacterium that was isolated from mud.
NCBI tax id
- NCBI tax id: 36841
- Matching level: species
strain history
| @ref | history |
|---|---|
| 608 | <- ATCC <- L.W. Gaston, NIH |
| 67770 | ATCC 14880 <-- L. W. Gaton. |
doi: 10.13145/bacdive2596.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Terrisporobacter
- species: Terrisporobacter glycolicus
- full scientific name: Terrisporobacter glycolicus (Gaston and Stadtman 1963) Gerritsen et al. 2014
synonyms
- @ref: 20215
- synonym: Clostridium glycolicum
@ref: 608
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Terrisporobacter
species: Terrisporobacter glycolicus
full scientific name: Terrisporobacter glycolicus (Gaston and Stadtman 1963) Gerritsen et al. 2014
type strain: yes
Culture and growth conditions
culture medium
- @ref: 608
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 608 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 608 | anaerobe | |
| 125439 | facultative anaerobe | 95.7 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 608 | mud | Maryland | USA | USA | North America |
| 67770 | Mud | MD | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
taxonmaps
- @ref: 69479
- File name: preview.99_2.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_2;97_2;98_2;99_2&stattab=map
- Last taxonomy: Terrisporobacter
- 16S sequence: X76750
- Sequence Identity:
- Total samples: 26442
- soil counts: 572
- aquatic counts: 843
- animal counts: 24867
- plant counts: 160
Safety information
risk assessment
- @ref: 608
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium glycolicum strain DSM 1288 16S ribosomal RNA gene, partial sequence | HM245942 | 843 | nuccore | 1121315 |
| 608 | Clostridium glycolicum 16S rRNA gene, type strain DSM 1288T | X76750 | 1461 | nuccore | 1121315 |
| 67770 | Terrisporobacter glycolicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 1401 | LC036317 | 1466 | nuccore | 36841 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium glycolicum ATCC 14880 | 1121315.4 | wgs | patric | 1121315 |
| 66792 | Clostridium glycolicum ATCC 14880 | 1121315.3 | wgs | patric | 1121315 |
| 66792 | Terrisporobacter glycolicus DSM 1288 | 2526164522 | draft | img | 1121315 |
| 66792 | Terrisporobacter glycolicus ATCC 14880 | 2515154199 | draft | img | 1121315 |
| 67770 | Terrisporobacter glycolicus ATCC 14880 = DSM 1288 | GCA_000373865 | scaffold | ncbi | 1121315 |
| 67770 | Terrisporobacter glycolicus ATCC 14880 = DSM 1288 | GCA_000439105 | scaffold | ncbi | 1121315 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 608 | 29.0 | |
| 67770 | 29 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 95.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 86.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 67 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 51.5 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 65.192 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 83.436 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 66.33 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 93.154 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.2 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 75.72 | no |
External links
@ref: 608
culture collection no.: DSM 1288, ATCC 14880, BCRC 14553, JCM 1401, NCIMB 10632, NCTC 13026
straininfo link
- @ref: 72127
- straininfo: 265444
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 11571179 | Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots. | Kusel K, Karnholz A, Trinkwalter T, Devereux R, Acker G, Drake HL | Appl Environ Microbiol | 10.1128/AEM.67.10.4734-4741.2001 | 2001 | Acetates/*metabolism, Anaerobiosis, Clostridium/genetics/*physiology/ultrastructure, Culture Media, Genes, rRNA, Hydrogen/metabolism, Molecular Sequence Data, Oxygen/pharmacology, Phylogeny, Plant Roots/*microbiology, Poaceae/*microbiology, Seawater, Sequence Analysis, DNA | Cultivation |
| Phylogeny | 11760946 | Isolation of a cinnamic acid-metabolizing Clostridium glycolicum strain from oil mill wastewaters and emendation of the species description. | Chamkha M, Labat M, Patel BK, Garcia JL | Int J Syst Evol Microbiol | 10.1099/00207713-51-6-2049 | 2001 | Biodegradation, Environmental, Cinnamates/*metabolism, Clostridium/*classification/genetics/isolation & purification/physiology, Culture Media, DNA, Ribosomal/analysis, *Industrial Waste, Molecular Sequence Data, Nucleic Acid Hybridization, Olive Oil, *Plant Oils, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology | Cultivation |
| Phylogeny | 16701516 | Clostridium bartlettii sp. nov., isolated from human faeces. | Song YL, Liu CX, McTeague M, Summanen P, Finegold SM | Anaerobe | 10.1016/j.anaerobe.2004.04.004 | 2004 | ||
| Phylogeny | 26297478 | Terrisporobacter petrolearius sp. nov., isolated from an oilfield petroleum reservoir. | Deng Y, Guo X, Wang Y, He M, Ma K, Wang H, Chen X, Kong D, Yang Z, Ruan Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000450 | 2015 | Bacterial Typing Techniques, Base Composition, China, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oil and Gas Fields/*microbiology, Petroleum/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 608 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1288) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1288 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72127 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265444.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |