Name: Terrisporobacter glycolicus DSM 1288
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2596

Type strain:

Species: Terrisporobacter glycolicus

Culture col. no.: DSM 1288, ATCC 14880, BCRC 14553, JCM 1401, NCIMB 10632, NCTC 13026

Strain history: ATCC 14880 <-- L. W. Gaton.

NCBI tax ID(s): 36841 (species)

SI-ID 265444

ATCC 14880, DSM 1288, NCIB 10632, JCM 1401, CCRC 14553, NCIMB 10632, BCRC 14553, NCTC 13026

Other strains from Terrisporobacter glycolicus

T. glycolicus CIN5, CIN 5, DSM 13561, CIP 106672
T. glycolicus RD-1, DSM 13865

Section

Terrisporobacter glycolicus DSM 1288 is an anaerobe, mesophilic bacterium that was isolated from mud.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Terrisporobacter*
	Species	**Terrisporobacter glycolicus**
	Full Scientific Name (LPSN)	Terrisporobacter glycolicus (Gaston and Stadtman 1963) Gerritsen et al. 2014

Synonym

Clostridium glycolicum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #608]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #608]

Culture medium growth

[Ref.: #608]

Culture medium link

Medium recipe at MediaDive

[Ref.: #608]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #608]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #608]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #608]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #608]	Sample type/isolated from	mud
[Ref.: #608]	Geographic location (country and/or sea, region)	Maryland
[Ref.: #608]	Country	USA
[Ref.: #608]	Country ISO 3 Code	USA
[Ref.: #608]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Mud
[Ref.: #67770]	Geographic location (country and/or sea, region)	MD
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X76750 (>99% sequence identity) for Terrisporobacter from Microbeatlas

Aquatic Samples	843
Soil Samples	572
Animal Samples	24867
Plant Samples	160
Total Samples	26442

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #608]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #608]	Clostridium glycolicum 16S rRNA gene, type strain DSM 1288T	X76750	1461	ENA	1121315 tax ID
[Ref.: #67770]	Terrisporobacter glycolicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 1401	LC036317	1466	ENA	36841 tax ID
[Ref.: #20218]	Clostridium glycolicum strain DSM 1288 16S ribosomal RNA gene, partial sequence	HM245942	843	ENA	1121315 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Terrisporobacter glycolicus ATCC 14880 = DSM 1288	GCA_000373865	scaffold	GenBank	1121315 tax ID
[Ref.: #67770]	Terrisporobacter glycolicus ATCC 14880 = DSM 1288	GCA_000439105	scaffold	GenBank	1121315 tax ID
[Ref.: #66792]	Clostridium glycolicum ATCC 14880	1121315.4	wgs	PATRIC	1121315 tax ID	*
[Ref.: #66792]	Clostridium glycolicum ATCC 14880	1121315.3	wgs	PATRIC	1121315 tax ID	*
[Ref.: #66792]	Terrisporobacter glycolicus DSM 1288	2526164522	draft	JGI IMG/M	1121315 tax ID	*
[Ref.: #66792]	Terrisporobacter glycolicus ATCC 14880	2515154199	draft	JGI IMG/M	1121315 tax ID	*

[Ref.: #608]	GC-content	29.0 mol%
[Ref.: #67770]	GC-content	29 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium glycolicum ATCC 14880 PATRIC: 1121315.4
[Ref.: #69480]	motile	yes	79.339	no
[Ref.: #69480]	flagellated	no	61.513	no
[Ref.: #69480]	gram-positive	yes	87.817	no
[Ref.: #69480]	anaerobic	yes	98.604	yes
[Ref.: #69480]	aerobic	no	98.51	yes
[Ref.: #69480]	halophile	no	90.538	no
[Ref.: #69480]	spore-forming	yes	91.525	no
[Ref.: #69480]	glucose-util	yes	86.248	no
[Ref.: #69480]	thermophile	no	92.888	yes
[Ref.: #69480]	glucose-ferment	yes	64.455	no

Availability in culture collections External links

[Ref.: #608]

Culture collection no.

DSM 1288, ATCC 14880, BCRC 14553, JCM 1401, NCIMB 10632, NCTC 13026

[Ref.: #72127]

SI-ID 265444

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrisporobacter petrolearius sp. nov., isolated from an oilfield petroleum reservoir.	Deng Y, Guo X, Wang Y, He M, Ma K, Wang H, Chen X, Kong D, Yang Z, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000450	2015	*
Phylogeny	Clostridium bartlettii sp. nov., isolated from human faeces.	Song YL, Liu CX, McTeague M, Summanen P, Finegold SM	Anaerobe	10.1016/j.anaerobe.2004.04.004	2004	*
Phylogeny	Isolation of a cinnamic acid-metabolizing Clostridium glycolicum strain from oil mill wastewaters and emendation of the species description.	Chamkha M, Labat M, Patel BK, Garcia JL	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2049	2001	*
Metabolism	Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots.	Kusel K, Karnholz A, Trinkwalter T, Devereux R, Acker G, Drake HL	Appl Environ Microbiol	10.1128/AEM.67.10.4734-4741.2001	2001	*

References

#608	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1288

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72127

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265444.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Terrisporobacter glycolicus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Clostridium glycolicum ATCC 14880

Change proposal

Change proposal