Strain identifier

BacDive ID: 2544

Type strain: Yes

Species: Clostridium baratii

Strain Designation: 2227, 10023

Strain history: CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10023 <- ATCC <- S. Nakamura: strain 2227, Clostridium paraperfringens <- Inst. Pasteur, Paris, France, Inflabis barati

NCBI tax ID(s): 1561 (species)

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General

@ref: 313

BacDive-ID: 2544

DSM-Number: 601

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium baratii 2227 is an anaerobe, mesophilic bacterium that was isolated from canine renal epithelioma.

NCBI tax id

  • NCBI tax id: 1561
  • Matching level: species

strain history

@refhistory
313<- S. Nakamura, 2227 (C. paraperfringens) <- Inst. Pasteur, Paris, 2227 (Inflabilis barati)
67770ATCC 27638 <-- S. Nakamura 2227 <-- Inst. Pasteur, Paris; 2227.
116731CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10023 <- ATCC <- S. Nakamura: strain 2227, Clostridium paraperfringens <- Inst. Pasteur, Paris, France, Inflabis barati

doi: 10.13145/bacdive2544.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium baratii
  • full scientific name: Clostridium baratii corrig. (Prévot 1938) Holdeman and Moore 1970 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Inflabilis barati
    20215Clostridium paraperfringens
    20215Clostridium perenne
    20215Clostridium barati
    20215Acuformis perennis

@ref: 313

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium baratii

full scientific name: Clostridium baratii (Prévot 1938) Holdeman and Moore 1970

strain designation: 2227, 10023

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
313COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
313FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://mediadive.dsmz.de/medium/1203aName: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
41364MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116731CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
313positivegrowth37mesophilic
41364positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 313
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose+builds acid from
6836717754glycerol+builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose+builds acid from
6836717814salicin+builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose+builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source

metabolite production

  • @ref: 68367
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68367
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
313--+-+++++--+++++/-----

Isolation, sampling and environmental information

isolation

@refsample type
313canine renal epithelioma
47905Canine renal epithelioma
67770Hog liver
116731Animal, Canine, renal epithelioma

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Urogenital tract#Kidney

taxonmaps

  • @ref: 69479
  • File name: preview.99_3386.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1766;97_2114;98_2594;99_3386&stattab=map
  • Last taxonomy: Clostridium baratii
  • 16S sequence: LC036313
  • Sequence Identity:
  • Total samples: 11853
  • soil counts: 585
  • aquatic counts: 927
  • animal counts: 10123
  • plant counts: 218

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
3132Risk group (German classification)
1167312Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
313C.barati (ATCC27638) rrn gene for 16S rRNAX681741515ena1561
67770Clostridium baratii gene for 16S ribosomal RNA, partial sequence, strain: JCM 1385LC0363131454ena1561

External links

@ref: 313

culture collection no.: DSM 601, ATCC 27638, VPI 4443, CCUG 24033, CIP 104306, JCM 1385, BCRC 14541, KCTC 5131

straininfo link

  • @ref: 72078
  • straininfo: 39101

Reference

@idauthorscataloguedoi/urltitle
313Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 601)https://www.dsmz.de/collection/catalogue/details/culture/DSM-601
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41364Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16199
47905Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 24033)https://www.ccug.se/strain?id=24033
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68367Automatically annotated from API 20A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72078Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39101.1StrainInfo: A central database for resolving microbial strain identifiers
116731Curators of the CIPCollection of Institut Pasteur (CIP 104306)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104306