Strain identifier
BacDive ID: 2528
Type strain:
Species: Clostridium aceticum
Strain history: DSM 1496 <-- M. Braun <-- H. A. Barker <-- K. T. Wieringa.
NCBI tax ID(s): 84022 (species)
General
@ref: 793
BacDive-ID: 2528
DSM-Number: 1496
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium aceticum DSM 1496 is an anaerobe, mesophilic bacterium that was isolated from mud.
NCBI tax id
- NCBI tax id: 84022
- Matching level: species
strain history
doi: 10.13145/bacdive2528.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium aceticum
- full scientific name: Clostridium aceticum (ex Wieringa 1940) Gottschalk and Braun 1981
@ref: 793
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium aceticum
full scientific name: Clostridium aceticum (ex Wieringa 1940) Gottschalk and Braun 1981
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 63.827
Culture and growth conditions
culture medium
- @ref: 793
- name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135)
- growth: yes
- link: https://mediadive.dsmz.de/medium/135
- composition: Name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135) Composition: NaHCO3 9.79432 g/l D-Fructose 9.79432 g/l Yeast extract 1.95886 g/l NH4Cl 0.979432 g/l Na2S x 9 H2O 0.489716 g/l L-Cysteine HCl x H2O 0.489716 g/l K2HPO4 0.440744 g/l KH2PO4 0.323213 g/l MgSO4 x 7 H2O 0.0587659 g/l Nitrilotriacetic acid 0.029383 g/l NaCl 0.0195886 g/l MnSO4 x H2O 0.00979432 g/l ZnSO4 x 7 H2O 0.00352595 g/l CoSO4 x 7 H2O 0.00352595 g/l FeSO4 x 7 H2O 0.00195886 g/l CaCl2 x 2 H2O 0.00195886 g/l NiCl2 x 6 H2O 0.000587659 g/l Sodium resazurin 0.000489716 g/l AlK(SO4)2 x 12 H2O 0.000391773 g/l CuSO4 x 5 H2O 0.000195886 g/l H3BO3 0.000195886 g/l Na2MoO4 x 2 H2O 0.000195886 g/l Pyridoxine hydrochloride 9.79432e-05 g/l Calcium D-(+)-pantothenate 4.89716e-05 g/l Nicotinic acid 4.89716e-05 g/l Riboflavin 4.89716e-05 g/l (DL)-alpha-Lipoic acid 4.89716e-05 g/l p-Aminobenzoic acid 4.89716e-05 g/l Thiamine HCl 4.89716e-05 g/l Folic acid 1.95886e-05 g/l Biotin 1.95886e-05 g/l Na2WO4 x 2 H2O 7.83546e-06 g/l Na2SeO3 x 5 H2O 5.87659e-06 g/l Vitamin B12 9.79432e-07 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
793 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
793 | anaerobe | |
69480 | anaerobe | 99.437 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 84.826
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 95.224
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
793 | mud |
67770 | Mud |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
Safety information
risk assessment
- @ref: 793
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
793 | Clostridium aceticum 16S rRNA gene, partial, strain DSM 1496 | Y18183 | 1368 | ena | 84022 |
67770 | Clostridium aceticum gene for 16S ribosomal RNA, partial sequence | AB910752 | 1283 | ena | 84022 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Clostridium aceticum DSM 1496 | GCA_001042715 | complete | ncbi | 84022 |
66792 | Clostridium aceticum strain DSM 1496 | 84022.5 | wgs | patric | 84022 |
66792 | Clostridium aceticum strain DSM 1496 | 84022.6 | complete | patric | 84022 |
66792 | Clostridium aceticum strain DSM 1496 | 84022.13 | plasmid | patric | 84022 |
66792 | Clostridium aceticum, DSM 1496 | 2609459698 | complete | img | 84022 |
66792 | Clostridium aceticum DSM 1496 | 2630968326 | draft | img | 84022 |
67770 | Clostridium aceticum strain DSM 1496, complete genome | CP009687 | ena | 84022 | |
67770 | Clostridium aceticum DSM 1496 | GCA_000949285 | scaffold | ncbi | 84022 |
66792 | Agrobacterium sp. 33MFTa1.1 33MFTa1.1 | GCA_004328495 | complete | patric | 1279031 |
66792 | Pseudomonas fulva F8_6S_4B | GCA_017166775 | scaffold | patric | 47880 |
66792 | Streptococcus parasanguinis CF10-6 | GCA_024295785 | contig | patric | 1318 |
GC content
@ref | GC-content |
---|---|
793 | 33.0 |
67770 | 33 |
External links
@ref: 793
culture collection no.: DSM 1496, ATCC 35044, JCM 15732, BCRC 14468, KCTC 3248, KCTC 5002, LMG 7577
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/45136 |
20218 | http://www.straininfo.net/strains/45135 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year |
---|---|---|---|---|---|---|
Genetics | 25931594 | Draft Genome Sequence of Clostridium aceticum DSM 1496, a Potential Butanol Producer through Syngas Fermentation. | Song Y, Hwang S, Cho BK | Genome Announc | 10.1128/genomeA.00258-15 | 2015 |
Genetics | 26184942 | Complete Genome Sequence of Rnf- and Cytochrome-Containing Autotrophic Acetogen Clostridium aceticum DSM 1496. | Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Gottschalk G, Daniel R, Durre P | Genome Announc | 10.1128/genomeA.00786-15 | 2015 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
793 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1496) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1496 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |