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Strain identifier

BacDive ID: 2528

Type strain: Yes

Species: Clostridium aceticum

Strain history: DSM 1496 <-- M. Braun <-- H. A. Barker <-- K. T. Wieringa.

NCBI tax ID(s): 84022 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 793

BacDive-ID: 2528

DSM-Number: 1496

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium aceticum DSM 1496 is an anaerobe, mesophilic bacterium that was isolated from mud.

NCBI tax id

  • NCBI tax id: 84022
  • Matching level: species

strain history

doi: 10.13145/bacdive2528.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium aceticum
  • full scientific name: Clostridium aceticum (ex Wieringa 1940) Gottschalk and Braun 1981

@ref: 793

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium aceticum

full scientific name: Clostridium aceticum (ex Wieringa 1940) Gottschalk and Braun 1981

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 63.827

Culture and growth conditions

culture medium

  • @ref: 793
  • name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/135
  • composition: Name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135) Composition: NaHCO3 9.79432 g/l D-Fructose 9.79432 g/l Yeast extract 1.95886 g/l NH4Cl 0.979432 g/l Na2S x 9 H2O 0.489716 g/l L-Cysteine HCl x H2O 0.489716 g/l K2HPO4 0.440744 g/l KH2PO4 0.323213 g/l MgSO4 x 7 H2O 0.0587659 g/l Nitrilotriacetic acid 0.029383 g/l NaCl 0.0195886 g/l MnSO4 x H2O 0.00979432 g/l ZnSO4 x 7 H2O 0.00352595 g/l CoSO4 x 7 H2O 0.00352595 g/l FeSO4 x 7 H2O 0.00195886 g/l CaCl2 x 2 H2O 0.00195886 g/l NiCl2 x 6 H2O 0.000587659 g/l Sodium resazurin 0.000489716 g/l AlK(SO4)2 x 12 H2O 0.000391773 g/l CuSO4 x 5 H2O 0.000195886 g/l H3BO3 0.000195886 g/l Na2MoO4 x 2 H2O 0.000195886 g/l Pyridoxine hydrochloride 9.79432e-05 g/l Calcium D-(+)-pantothenate 4.89716e-05 g/l Nicotinic acid 4.89716e-05 g/l Riboflavin 4.89716e-05 g/l (DL)-alpha-Lipoic acid 4.89716e-05 g/l p-Aminobenzoic acid 4.89716e-05 g/l Thiamine HCl 4.89716e-05 g/l Folic acid 1.95886e-05 g/l Biotin 1.95886e-05 g/l Na2WO4 x 2 H2O 7.83546e-06 g/l Na2SeO3 x 5 H2O 5.87659e-06 g/l Vitamin B12 9.79432e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
793positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
793anaerobe
69480anaerobe99.437

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 84.826

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 95.224

Isolation, sampling and environmental information

isolation

@refsample type
793mud
67770Mud

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Mud (Sludge)

Safety information

risk assessment

  • @ref: 793
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
793Clostridium aceticum 16S rRNA gene, partial, strain DSM 1496Y181831368ena84022
67770Clostridium aceticum gene for 16S ribosomal RNA, partial sequenceAB9107521283ena84022

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium aceticum DSM 1496GCA_001042715completencbi84022
66792Clostridium aceticum strain DSM 149684022.5wgspatric84022
66792Clostridium aceticum strain DSM 149684022.6completepatric84022
66792Clostridium aceticum strain DSM 149684022.13plasmidpatric84022
66792Clostridium aceticum, DSM 14962609459698completeimg84022
66792Clostridium aceticum DSM 14962630968326draftimg84022
67770Clostridium aceticum strain DSM 1496, complete genomeCP009687ena84022
67770Clostridium aceticum DSM 1496GCA_000949285scaffoldncbi84022
66792Agrobacterium sp. 33MFTa1.1 33MFTa1.1GCA_004328495completepatric1279031
66792Pseudomonas fulva F8_6S_4BGCA_017166775scaffoldpatric47880
66792Streptococcus parasanguinis CF10-6GCA_024295785contigpatric1318

GC content

@refGC-content
79333.0
6777033

External links

@ref: 793

culture collection no.: DSM 1496, ATCC 35044, JCM 15732, BCRC 14468, KCTC 3248, KCTC 5002, LMG 7577

straininfo link

@refpassport
20218http://www.straininfo.net/strains/45136
20218http://www.straininfo.net/strains/45135

literature

topicPubmed-IDtitleauthorsjournalDOIyear
Genetics25931594Draft Genome Sequence of Clostridium aceticum DSM 1496, a Potential Butanol Producer through Syngas Fermentation.Song Y, Hwang S, Cho BKGenome Announc10.1128/genomeA.00258-152015
Genetics26184942Complete Genome Sequence of Rnf- and Cytochrome-Containing Autotrophic Acetogen Clostridium aceticum DSM 1496.Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Gottschalk G, Daniel R, Durre PGenome Announc10.1128/genomeA.00786-152015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
793Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1496)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1496
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)