Archive BacDiveID:10.13145/bacdive2528.20221219.7.1

Strain identifier

BacDive ID: 2528

Type strain:

Species: Clostridium aceticum

Strain history: DSM 1496 <-- M. Braun <-- H. A. Barker <-- K. T. Wieringa.

NCBI tax ID(s): 84022 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 793

BacDive-ID: 2528

DSM-Number: 1496

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium aceticum DSM 1496 is an anaerobe, mesophilic bacterium that was isolated from mud.

NCBI tax id

NCBI tax id: 84022
Matching level: species

strain history

doi: 10.13145/bacdive2528.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium aceticum
full scientific name: Clostridium aceticum (ex Wieringa 1940) Gottschalk and Braun 1981

@ref: 793

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium aceticum

full scientific name: Clostridium aceticum (ex Wieringa 1940) Gottschalk and Braun 1981

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: positive
confidence: 63.827

Culture and growth conditions

culture medium

@ref: 793
name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135)
growth: yes
link: https://mediadive.dsmz.de/medium/135
composition: Name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135) Composition: NaHCO3 9.79432 g/l D-Fructose 9.79432 g/l Yeast extract 1.95886 g/l NH4Cl 0.979432 g/l Na2S x 9 H2O 0.489716 g/l L-Cysteine HCl x H2O 0.489716 g/l K2HPO4 0.440744 g/l KH2PO4 0.323213 g/l MgSO4 x 7 H2O 0.0587659 g/l Nitrilotriacetic acid 0.029383 g/l NaCl 0.0195886 g/l MnSO4 x H2O 0.00979432 g/l ZnSO4 x 7 H2O 0.00352595 g/l CoSO4 x 7 H2O 0.00352595 g/l FeSO4 x 7 H2O 0.00195886 g/l CaCl2 x 2 H2O 0.00195886 g/l NiCl2 x 6 H2O 0.000587659 g/l Sodium resazurin 0.000489716 g/l AlK(SO4)2 x 12 H2O 0.000391773 g/l CuSO4 x 5 H2O 0.000195886 g/l H3BO3 0.000195886 g/l Na2MoO4 x 2 H2O 0.000195886 g/l Pyridoxine hydrochloride 9.79432e-05 g/l Calcium D-(+)-pantothenate 4.89716e-05 g/l Nicotinic acid 4.89716e-05 g/l Riboflavin 4.89716e-05 g/l (DL)-alpha-Lipoic acid 4.89716e-05 g/l p-Aminobenzoic acid 4.89716e-05 g/l Thiamine HCl 4.89716e-05 g/l Folic acid 1.95886e-05 g/l Biotin 1.95886e-05 g/l Na2WO4 x 2 H2O 7.83546e-06 g/l Na2SeO3 x 5 H2O 5.87659e-06 g/l Vitamin B12 9.79432e-07 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
793	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance	confidence
793	anaerobe
69480	anaerobe	99.437

spore formation

@ref: 69480
spore formation: yes
confidence: 84.826

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 95.224

Isolation, sampling and environmental information

isolation

@ref	sample type
793	mud
67770	Mud

isolation source categories

Cat1: #Environmental
Cat2: #Terrestrial
Cat3: #Mud (Sludge)

Safety information

risk assessment

@ref: 793
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
793	Clostridium aceticum 16S rRNA gene, partial, strain DSM 1496	Y18183	1368	ena	84022
67770	Clostridium aceticum gene for 16S ribosomal RNA, partial sequence	AB910752	1283	ena	84022

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Clostridium aceticum DSM 1496	GCA_001042715	complete	ncbi	84022
66792	Clostridium aceticum strain DSM 1496	84022.5	wgs	patric	84022
66792	Clostridium aceticum strain DSM 1496	84022.6	complete	patric	84022
66792	Clostridium aceticum strain DSM 1496	84022.13	plasmid	patric	84022
66792	Clostridium aceticum, DSM 1496	2609459698	complete	img	84022
66792	Clostridium aceticum DSM 1496	2630968326	draft	img	84022
67770	Clostridium aceticum strain DSM 1496, complete genome	CP009687		ena	84022
67770	Clostridium aceticum DSM 1496	GCA_000949285	scaffold	ncbi	84022
66792	Agrobacterium sp. 33MFTa1.1 33MFTa1.1	GCA_004328495	complete	patric	1279031
66792	Pseudomonas fulva F8_6S_4B	GCA_017166775	scaffold	patric	47880
66792	Streptococcus parasanguinis CF10-6	GCA_024295785	contig	patric	1318

GC content

@ref	GC-content
793	33.0
67770	33

External links

@ref: 793

culture collection no.: DSM 1496, ATCC 35044, JCM 15732, BCRC 14468, KCTC 3248, KCTC 5002, LMG 7577

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/45136
20218	http://www.straininfo.net/strains/45135

literature

topic	Pubmed-ID	title	authors	journal	DOI	year
Genetics	25931594	Draft Genome Sequence of Clostridium aceticum DSM 1496, a Potential Butanol Producer through Syngas Fermentation.	Song Y, Hwang S, Cho BK	Genome Announc	10.1128/genomeA.00258-15	2015
Genetics	26184942	Complete Genome Sequence of Rnf- and Cytochrome-Containing Autotrophic Acetogen Clostridium aceticum DSM 1496.	Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Gottschalk G, Daniel R, Durre P	Genome Announc	10.1128/genomeA.00786-15	2015

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
793	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1496)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-1496
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)