Strain identifier

BacDive ID: 24452

Type strain: Yes

Species: Halosaccharopolyspora lacisalsi

Strain history: <- TW Guan, Tarim Univ., China

NCBI tax ID(s): 1000566 (species)

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General

@ref: 20795

BacDive-ID: 24452

DSM-Number: 45975

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Halosaccharopolyspora lacisalsi DSM 45975 is an aerobe, spore-forming, mesophilic bacterium that was isolated from hypersaline habitat.

NCBI tax id

  • NCBI tax id: 1000566
  • Matching level: species

strain history

@refhistory
20795<- J. S. Lee, KRIBB; KCTC 19987
67771<- TW Guan, Tarim Univ., China

doi: 10.13145/bacdive24452.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Halosaccharopolyspora
  • species: Halosaccharopolyspora lacisalsi
  • full scientific name: Halosaccharopolyspora lacisalsi (Guan et al. 2013) Teo et al. 2021

  • synonyms

    • @ref: 20215
    • synonym: Saccharopolyspora lacisalsi

@ref: 20795

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharopolyspora

species: Saccharopolyspora lacisalsi

full scientific name: Saccharopolyspora lacisalsi Guan et al. 2013

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
67771positive
69480no96.071
69480positive100

Culture and growth conditions

culture medium

  • @ref: 20795
  • name: STARCH-MINERAL SALT-AGAR (STMS) + 15% NACL (DSMZ Medium 1241)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1241
  • composition: Name: STARCH - MINERAL SALT - AGAR (STMS) + 15% NaCl (DSMZ Medium 1241) Composition: NaCl 150.0 g/l Agar 15.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20795positivegrowth37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481yes98
69480yes99.671

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20795hypersaline habitatXinjiang Province, Lop Nur salt lakeChinaCHNAsia
67771From saline soilChinaCHNAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_57431.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_25488;97_31955;98_40934;99_57431&stattab=map
  • Last taxonomy: Saccharopolyspora lacisalsi subclade
  • 16S sequence: JF411070
  • Sequence Identity:
  • Total samples: 718
  • soil counts: 317
  • aquatic counts: 134
  • animal counts: 209
  • plant counts: 58

Safety information

risk assessment

  • @ref: 20795
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20795
  • description: Saccharopolyspora lacisalsi strain TRM 40133 16S ribosomal RNA gene, partial sequence
  • accession: JF411070
  • length: 1420
  • database: ena
  • NCBI tax ID: 1000566

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halosaccharopolyspora lacisalsi DSM 45975GCA_014137975contigncbi1000566
66792Saccharopolyspora lacisalsi strain DSM 459751000566.3wgspatric1000566
66792Saccharopolyspora lacisalsi DSM 459752820988766draftimg1000566

GC content

  • @ref: 20795
  • GC-content: 68.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes98no
motileno91.404no
flagellatedno97.525no
gram-positiveyes92.218yes
anaerobicno97.454yes
aerobicyes90.252yes
halophileyes65.627no
spore-formingyes85.22no
thermophileno94.022no
glucose-utilyes88.146no
glucose-fermentno89.834no

External links

@ref: 20795

culture collection no.: DSM 45975, CCTCC AA 2010012, KCTC 19987, TRM 40133

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20795Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45975Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45975)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1