Strain identifier
BacDive ID: 24401
Type strain: 
Species: Pseudomonas viridiflava
Strain Designation: 625
Variant: Isotype of BacDive ID 13016
Strain history: <- NCPPB
NCBI tax ID(s): 33069 (species)
version 8.1 (current version)
General
@ref: 21132
BacDive-ID: 24401
DSM-Number: 6694
keywords: 16S sequence, Bacteria, mesophilic, plant pathogen
description: Pseudomonas viridiflava 625 is a mesophilic plant pathogen of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 33069
- Matching level: species
strain history
- @ref: 21132
- history: <- NCPPB
doi: 10.13145/bacdive24401.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas viridiflava
- full scientific name: Pseudomonas viridiflava (Burkholder 1930) Dowson 1939 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Phytomonas viridiflava
@ref: 21132
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas viridiflava
full scientific name: Pseudomonas viridiflava (Burkholder 1930) Dowson 1939
strain designation: 625
variant: Isotype of BacDive ID 13016
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21132
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 21132
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_910.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_718;99_910&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: AY180972
- Sequence Identity:
- Total samples: 736
- soil counts: 184
- aquatic counts: 147
- animal counts: 195
- plant counts: 210
Safety information
risk assessment
- @ref: 21132
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21132
- description: Pseudomonas viridiflava strain CECT 458 16S ribosomal RNA gene, partial sequence
- accession: AY180972
- length: 1439
- database: ena
- NCBI tax ID: 33069
External links
@ref: 21132
culture collection no.: DSM 6694, ATCC 13223
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 29148362 | Pseudomonas floridensis sp. nov., a bacterial pathogen isolated from tomato. | Timilsina S, Minsavage GV, Preston J, Newberry EA, Paret ML, Goss EM, Jones JB, Vallad GE | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002445 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lycopersicon esculentum/*microbiology, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, Plant Diseases/microbiology, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Solanum tuberosum/microbiology, Tobacco/microbiology | Transcriptome |
| Phylogeny | 34800898 | Pseudomonas alliivorans sp. nov., a plant-pathogenic bacterium isolated from onion foliage in Georgia, USA. | Zhao M, Tyson C, Chen HC, Paudel S, Gitaitis R, Kvitko B, Dutta B | Syst Appl Microbiol | 10.1016/j.syapm.2021.126278 | 2021 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Georgia, Nucleic Acid Hybridization, *Onions, Phylogeny, *Pseudomonas/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21132 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6694 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6694) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |