Strain identifier

BacDive ID: 24335

Type strain: Yes

Species: Paenisporosarcina indica

Strain Designation: PN2

Strain history: S. Shivaji PN2.

NCBI tax ID(s): 650093 (species)

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General

@ref: 21197

BacDive-ID: 24335

DSM-Number: 28130

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped

description: Paenisporosarcina indica PN2 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 650093
  • Matching level: species

strain history

@refhistory
21197<- LMG; LMG 23933 <- S. Shivaji, CCMB
67770S. Shivaji PN2.

doi: 10.13145/bacdive24335.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Paenisporosarcina
  • species: Paenisporosarcina indica
  • full scientific name: Paenisporosarcina indica Reddy et al. 2013

@ref: 21197

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Planococcaceae

genus: Paenisporosarcina

species: Paenisporosarcina indica

full scientific name: Paenisporosarcina indica Reddy et al. 2013

strain designation: PN2

type strain: yes

Morphology

cell morphology

  • @ref: 30918
  • gram stain: positive
  • cell length: 2.5 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30918
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30918positivegrowth0-25
30918positiveoptimum20psychrophilic
67770positivegrowth20psychrophilic

culture pH

@refabilitytypepH
30918positivegrowth06-08
30918positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30918
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30918
  • spore formation: yes

halophily

  • @ref: 30918
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

  • @ref: 30918
  • Chebi-ID: 16947
  • metabolite: citrate
  • utilization activity: +
  • kind of utilization tested: carbon source

enzymes

@refvalueactivityec
30918catalase+1.11.1.6
30918gelatinase+
30918urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21197soilPindari glacier in the HimalayasIndiaINDAsia
67770Soil sample at altitude of ca. 3500 m near the Pindari glacier in the Himalayas

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_4370.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1795;97_2149;98_3283;99_4370&stattab=map
  • Last taxonomy: Paenisporosarcina
  • 16S sequence: FN397659
  • Sequence Identity:
  • Total samples: 881
  • soil counts: 516
  • aquatic counts: 186
  • animal counts: 148
  • plant counts: 31

Safety information

risk assessment

  • @ref: 21197
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21197
  • description: Paenisporosarcina indica partial 16S rRNA gene, type strain PN2T
  • accession: FN397659
  • length: 1518
  • database: ena
  • NCBI tax ID: 650093

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenisporosarcina indica strain PN2650093.5wgspatric650093
66792Paenisporosarcina indica PN22791354937draftimg650093
67770Paenisporosarcina indica PN2GCA_001939075contigncbi650093

GC content

  • @ref: 30918
  • GC-content: 42

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes93.966yes
anaerobicno98.94yes
halophileno65.511no
spore-formingyes92.67no
glucose-utilyes81.431no
thermophileno99.144yes
flagellatedno52.85yes
aerobicyes95.265yes
motileyes75.126yes
glucose-fermentno93.571no

External links

@ref: 21197

culture collection no.: DSM 28130, JCM 15114, LMG 23933

straininfo link

  • @ref: 88261
  • straininfo: 293327

literature

  • topic: Phylogeny
  • Pubmed-ID: 23355696
  • title: Paenisporosarcina indica sp. nov., a psychrophilic bacterium from a glacier, and reclassification of Sporosarcina antarctica Yu et al., 2008 as Paenisporosarcina antarctica comb. nov. and emended description of the genus Paenisporosarcina.
  • authors: Reddy GSN, Manasa BP, Singh SK, Shivaji S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.047514-0
  • year: 2013
  • mesh: Antarctic Regions, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Ice Cover/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sporosarcina/classification, Vitamin K 2/analogs & derivatives/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21197Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28130Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28130)
30918Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172724828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88261Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID293327.1