Paenisporosarcina indica (DSM 28130, JCM 15114, LMG 23933)

Name: Paenisporosarcina indica (DSM 28130, JCM 15114, LMG 23933)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24335

Type strain

Strain Designation PN2

Culture col. no. DSM 28130 JCM 15114 LMG 23933 PN2

NCBI tax ID(s) 650093

Special Collections DSMZ JCM Literature strains

History <- LMG; LMG 23933 <- S. Shivaji, CCMB S. Shivaji PN2.

Links

Paenisporosarcina indica PN2 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 293327

LMG 23933,JCM 15114

@ref 20215

Last LPSN update 2026-02-09 11:23:57

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Paenisporosarcina

Species Paenisporosarcina indica

Full scientific name Paenisporosarcina indica Reddy et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30918	positive	2.5 µm	0.5 µm	rod-shaped

Pigmentation

30918

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30918	positive	growth	0-25
30918	positive	optimum	20
67770	positive	growth	20

Culture pH

@ref	Ability	Type	PH
30918	positive	optimum	7
30918	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

30918

Oxygen toleranceaerobe

Spore formation

30918

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30918	NaCl	positive	growth	0-4 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30918	16947 ChEBI	citrate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30918	catalase	+	1.11.1.6
30918	gelatinase	+
30918	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21197	soil	Pindari glacier in the Himalayas	India	IND	Asia
67770	Soil sample at altitude of ca. 3500 m near the Pindari glacier in the Himalayas

Taxonmaps

69479

Global distribution of 16S sequence FN397659 (>99% sequence identity) for Paenisporosarcina from Microbeatlas

Aquatic Samples	186
Soil Samples	516
Animal Samples	148
Plant Samples	31
Total Samples	881

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21197	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM193907v1 assembly for Paenisporosarcina indica PN2	contig	GCA_001939075	650093.5	2791354937	650093	73.28

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21197	Paenisporosarcina indica partial 16S rRNA gene, type strain PN2T	FN397659	1518		650093

GC content

30918

GC-content (mol%)42

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenisporosarcina indica PN2
NCBI: GCA_001939075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	83.80	no
125439	motility	BacteriaNetⓘ	yes	66.20	no
125439	gram_stain	BacteriaNetⓘ	variable	72.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenisporosarcina indica strain PN2
PATRIC: 650093.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.91	yes
125438	anaerobic	anaerobicⓘ	no	91.18	yes
125438	spore-forming	spore-formingⓘ	yes	86.32	no
125438	aerobic	aerobicⓘ	yes	83.35	yes
125438	thermophilic	thermophileⓘ	no	92.39	yes
125438	flagellated	motile2+ⓘ	yes	56.03	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Ancient Roman bacterium against current issues: strain Aquil_B6, Paenisporosarcina quisquiliarum, or Psychrobacillus psychrodurans?	Colautti A, Comi G, Peterlunger E, Iacumin L.	Microbiol Spectr	10.1128/spectrum.00686-23	2023
Phylogeny	Paenisporosarcina indica sp. nov., a psychrophilic bacterium from a glacier, and reclassification of Sporosarcina antarctica Yu et al., 2008 as Paenisporosarcina antarctica comb. nov. and emended description of the genus Paenisporosarcina.	Reddy GSN, Manasa BP, Singh SK, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.047514-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21197	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28130
#27248	IJSEM 2927 2013 ( DOI 10.1099/ijs.0.047514-0 , PubMed 23355696 )
#30918	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27248
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenisporosarcina indica (DSM 28130, JCM 15114, LMG 23933)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001939075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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