Strain identifier
BacDive ID: 24182
Type strain: 
Species: Agromyces tropicus
Strain Designation: CM9-9
Strain history: C. Thawai CM9-9.
NCBI tax ID(s): 555371 (species)
version 8.1 (current version)
General
@ref: 20270
BacDive-ID: 24182
DSM-Number: 27936
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Agromyces tropicus CM9-9 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 555371
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20270 | <- JCM <- C. Thawai; CM9-9 |
| 67770 | C. Thawai CM9-9. |
doi: 10.13145/bacdive24182.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Agromyces
- species: Agromyces tropicus
- full scientific name: Agromyces tropicus Thawai et al. 2011
@ref: 20270
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Agromyces
species: Agromyces tropicus
full scientific name: Agromyces tropicus Thawai et al. 2011
strain designation: CM9-9
type strain: yes
Morphology
cell morphology
- @ref: 29818
- gram stain: positive
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29818
- production: no
Culture and growth conditions
culture medium
- @ref: 20270
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20270 | positive | growth | 28 | mesophilic |
| 29818 | positive | optimum | 25-30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29818 | positive | growth | 06-12 | alkaliphile |
| 29818 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 29818
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29818 | NaCl | positive | growth | 0-6 % |
| 29818 | NaCl | positive | optimum | 4 % |
observation
- @ref: 67770
- observation: quinones: MK-12, MK-11
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29818 | 22599 | arabinose | + | carbon source |
| 29818 | 28260 | galactose | + | carbon source |
| 29818 | 17716 | lactose | + | carbon source |
| 29818 | 29864 | mannitol | + | carbon source |
| 29818 | 28053 | melibiose | + | carbon source |
| 29818 | 16634 | raffinose | + | carbon source |
| 29818 | 33942 | ribose | + | carbon source |
| 29818 | 17992 | sucrose | + | carbon source |
| 29818 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 29818
- value: gelatinase
- activity: +
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 20270 | soil | Chiang Mai Province | Thailand | THA | Asia |
| 67770 | Soil from Chiang Mai Province | Thailand | THA | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_105160.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3478;97_54145;98_71574;99_105160&stattab=map
- Last taxonomy: Agromyces tropicus subclade
- 16S sequence: AB454378
- Sequence Identity:
- Total samples: 1315
- soil counts: 634
- aquatic counts: 43
- animal counts: 81
- plant counts: 557
Safety information
risk assessment
- @ref: 20270
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20270
- description: Agromyces tropicus gene for 16S rRNA, partial sequence, strain: CM9-9
- accession: AB454378
- length: 1481
- database: ena
- NCBI tax ID: 555371
GC content
- @ref: 20270
- GC-content: 72.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 20270
culture collection no.: DSM 27936, BCC 34764, JCM 15672, MTCC 11075, NBRC 109073
straininfo link
- @ref: 88135
- straininfo: 400539
literature
- topic: Phylogeny
- Pubmed-ID: 20435752
- title: Agromyces tropicus sp. nov., isolated from soil.
- authors: Thawai C, Tanasupawat S, Suwanborirux K, Kudo T
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.021774-0
- year: 2010
- mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20270 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27936 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27936) | |||
| 29818 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26195 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88135 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400539.1 |