Agromyces tropicus (DSM 27936, BCC 34764, CM9-9)

Name: Agromyces tropicus (DSM 27936, BCC 34764, CM9-9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24182

Type strain

Strain Designation CM9-9

Culture col. no. DSM 27936 BCC 34764 CM9-9 JCM 15672 NBRC 109073 1 more

NCBI tax ID(s) 555371

Special Collections DSMZ JCM Literature strains

History DSMZ <- JCM <- C. Thawai; CM9-9 JCM <-- C. Thawai CM9-9.

Links

Agromyces tropicus CM9-9 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400539

JCM 15672,NBRC 109073,DSM 27936

@ref 20215

Last LPSN update 2026-05-29 08:30:34

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Agromyces

Species Agromyces tropicus

Full scientific name Agromyces tropicus Thawai et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
29818	positive	rod-shaped
125439	positive			97.788

Pigmentation

29818

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20270	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20270	positive	growth	28
29818	positive	optimum	25-30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
29818	positive	optimum	8
29818	positive	growth	06-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29818	aerobe
125439	obligate aerobe	98.688

Spore formation

@ref	Spore formation	Confidence
125439		93.232

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29818	NaCl	positive	growth	0-6 %
29818	NaCl	positive	optimum	4 %

Observation

67770

Observationquinones: MK-12, MK-11

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29818	22599 ChEBI	arabinose	+	carbon source
29818	28260 ChEBI	galactose	+	carbon source
29818	17716 ChEBI	lactose	+	carbon source
29818	29864 ChEBI	mannitol	+	carbon source
29818	28053 ChEBI	melibiose	+	carbon source
29818	16634 ChEBI	raffinose	+	carbon source
29818	33942 ChEBI	ribose	+	carbon source
29818	17992 ChEBI	sucrose	+	carbon source
29818	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity
29818	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20270	soil	Chiang Mai Province	Thailand	THA	Asia
67770	Soil from Chiang Mai Province		Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB454378 (>99% sequence identity) for Agromyces tropicus subclade from Microbeatlas

Aquatic Samples	43
Soil Samples	634
Animal Samples	81
Plant Samples	557
Total Samples	1315

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20270	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953134v1 assembly for Agromyces tropicus JCM 15672	contig	GCA_039531345	555371	55.47

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20270	Agromyces tropicus gene for 16S rRNA, partial sequence, strain: CM9-9	AB454378	1481		555371

GC content

@ref	GC-content (mol%)	Method
20270	72.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953134v1 assembly for Agromyces tropicus JCM 15672
NCBI: GCA_039531345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.69	no
125439	motility	BacteriaNetⓘ	no	75.95	no
125439	gram_stain	BacteriaNetⓘ	positive	97.79	no
125439	spore_formation	BacteriaNetⓘ	no	93.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces tropicus sp. nov., isolated from soil.	Thawai C, Tanasupawat S, Suwanborirux K, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.021774-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20270	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27936
#26195	IJSEM 605 2011 ( DOI 10.1099/ijs.0.021774-0 , PubMed 20435752 )
#29818	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26195
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Agromyces tropicus (DSM 27936, BCC 34764, CM9-9)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039531345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media