Name: Agromyces tropicus CM9-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24182

Type strain:

Species: Agromyces tropicus

Strain Designation: CM9-9

Culture col. no.: DSM 27936, BCC 34764, JCM 15672, MTCC 11075, NBRC 109073

Strain history: C. Thawai CM9-9.

NCBI tax ID(s): 555371 (species)

SI-ID 400539

DSM 27936

Section

Agromyces tropicus CM9-9 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agromyces*
	Species	**Agromyces tropicus**
	Full Scientific Name (LPSN)	Agromyces tropicus Thawai et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29818]	Gram stain	positive

[Ref.: #29818]	Cell shape	rod-shaped

[Ref.: #29818]	Motility	no

[Ref.: #29818]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20270]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #20270]

Culture medium growth

[Ref.: #20270]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20270]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20270]	growth	28 °C
[Ref.: #29818]	optimum	25-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #20270]	Temperature range	mesophilic
[Ref.: #29818]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29818]			optimum	8
[Ref.: #29818]			growth	06-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29818]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29818]		NaCl		growth	0-6	%
[Ref.: #29818]		NaCl		optimum	4	%

[Ref.: #67770]

Observation

quinones: MK-12, MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29818]	arabinose ChEBI	+	carbon source
[Ref.: #29818]	galactose ChEBI	+	carbon source
[Ref.: #29818]	lactose ChEBI	+	carbon source
[Ref.: #29818]	mannitol ChEBI	+	carbon source
[Ref.: #29818]	melibiose ChEBI	+	carbon source
[Ref.: #29818]	raffinose ChEBI	+	carbon source
[Ref.: #29818]	ribose ChEBI	+	carbon source
[Ref.: #29818]	sucrose ChEBI	+	carbon source
[Ref.: #29818]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #29818]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20270]	Sample type/isolated from	soil
[Ref.: #20270]	Geographic location (country and/or sea, region)	Chiang Mai Province
[Ref.: #20270]	Country	Thailand
[Ref.: #20270]	Country ISO 3 Code	THA
[Ref.: #20270]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from Chiang Mai Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB454378 (>99% sequence identity) for Agromyces tropicus subclade from Microbeatlas

Aquatic Samples	43
Soil Samples	634
Animal Samples	81
Plant Samples	557
Total Samples	1315

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20270]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20270]	Agromyces tropicus gene for 16S rRNA, partial sequence, strain: CM9-9	AB454378	1481	ENA	555371 tax ID

[Ref.: #20270]

GC-content

72.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20270]

Culture collection no.

DSM 27936, BCC 34764, JCM 15672, MTCC 11075, NBRC 109073

[Ref.: #88135]

SI-ID 400539

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces tropicus sp. nov., isolated from soil.	Thawai C, Tanasupawat S, Suwanborirux K, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.021774-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20270

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27936

#29818

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26195 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88135

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400539.1 )

#26195

IJSEM 605 2011 ( DOI 10.1099/ijs.0.021774-0 , PubMed 20435752 )

* These data were automatically processed and therefore are not curated

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