Strain identifier

BacDive ID: 24145

Type strain: No

Species: Legionella pneumophila subsp. pneumophila

Strain Designation: W872

Strain history: <- P. Bracegirdle, NCTC; NCTC 12821 <- J. V. Lee; W872

NCBI tax ID(s): 91891 (subspecies)

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General

@ref: 20626

BacDive-ID: 24145

DSM-Number: 27564

keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Legionella pneumophila subsp. pneumophila W872 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Water.

NCBI tax id

  • NCBI tax id: 91891
  • Matching level: subspecies

strain history

  • @ref: 20626
  • history: <- P. Bracegirdle, NCTC; NCTC 12821 <- J. V. Lee; W872

doi: 10.13145/bacdive24145.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella pneumophila subsp. pneumophila
  • full scientific name: Legionella pneumophila subsp. pneumophila (Brenner et al. 1979) Brenner et al. 1989

@ref: 20626

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella pneumophila subsp. pneumophila

full scientific name: Legionella pneumophila subsp. pneumophila (Brenner et al. 1979) Brenner et al. 1989

strain designation: W872

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.999

colony morphology

  • @ref: 20626
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 20626
  • name: BCYE-AGAR (DSMZ Medium 585)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/585
  • composition: Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base

culture temp

@refgrowthtypetemperaturerange
20626positivegrowth37mesophilic
63428positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
20626microaerophile
63428microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.993

enzymes

@refvalueactivityec
20626catalase+1.11.1.6
20626cytochrome-c oxidase-1.9.3.1

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    63428C15:01.115
    63428C16:0616
    63428C14:0 ISO713.618
    63428C14:0 ISO 3OH1.815.117
    63428C14:1 ω5c1.513.899
    63428C15:0 ANTEISO11.914.711
    63428C15:1 ω6c4.814.856
    63428C16:0 iso19.715.626
    63428C16:1 ISO H5.415.461
    63428C16:1 ω7c35.315.819
    63428C17:0 anteiso2.816.722
    63428C17:0 CYCLO1.516.888
    63428Unidentified1.216.313
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20626WaterNottingham, Queens Medical Centre, South BlockUnited KingdomGBREurope
63428WaterNottingham, Queens Medical CentreUnited KingdomGBREurope1993-01-01

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

  • @ref: 20626
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella pneumophila NCTC12821GCA_900452675contigncbi446
66792Legionella pneumophila strain NCTC12821446.724wgspatric446

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.375no
anaerobicno98.827no
halophileno86.267no
spore-formingno94.738no
glucose-utilyes65.152no
aerobicno89.099no
flagellatedno74.025no
thermophileno98.055yes
motileyes78.717no
glucose-fermentno86.526no

External links

@ref: 20626

culture collection no.: DSM 27564, NCTC 12821, WDCM 00205, CCUG 67715

straininfo link

  • @ref: 88103
  • straininfo: 115164

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20626Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27564Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27564)
63428Curators of the CCUGhttps://www.ccug.se/strain?id=67715Culture Collection University of Gothenburg (CCUG) (CCUG 67715)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88103Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID115164.1