Strain identifier

BacDive ID: 24139

Type strain: Yes

Species: Lactiplantibacillus mudanjiangensis

Strain Designation: 11050

Strain history: CIP <- 2014, LMG <- 2010, 2012, C. Gu, Northeast Agric. Univ., Heilongjiang Province, China: strain 11050

NCBI tax ID(s): 1296538 (species)

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General

@ref: 20999

BacDive-ID: 24139

DSM-Number: 28402

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped

description: Lactiplantibacillus mudanjiangensis 11050 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from From traditional pickle.

NCBI tax id

  • NCBI tax id: 1296538
  • Matching level: species

strain history

@refhistory
20999<- CCUG; CCUG 62991 <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; 11050
67771<- CCUG <- Chuntao Gu, Harbin, NEAU, China, 11050
121168CIP <- 2014, LMG <- 2010, 2012, C. Gu, Northeast Agric. Univ., Heilongjiang Province, China: strain 11050

doi: 10.13145/bacdive24139.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactiplantibacillus
  • species: Lactiplantibacillus mudanjiangensis
  • full scientific name: Lactiplantibacillus mudanjiangensis (Gu et al. 2013) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus mudanjiangensis

@ref: 20999

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactiplantibacillus

species: Lactiplantibacillus mudanjiangensis

full scientific name: Lactiplantibacillus mudanjiangensis (Gu et al. 2013) Zheng et al. 2020

strain designation: 11050

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31160positive2 µm0.9 µmrod-shapedno
67771rod-shapedno
67771positive
69480no97.145
69480positive100
121168positiverod-shapedno

colony morphology

  • @ref: 62928
  • incubation period: 1 day

pigmentation

  • @ref: 31160
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41599MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
20999MRS MEDIUM (DSMZ Medium 11)yesName: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled waterhttps://mediadive.dsmz.de/medium/11
121168CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
20999positivegrowth30mesophilic
31160positiveoptimum37mesophilic
41599positivegrowth30mesophilic
62928positivegrowth37mesophilic
67771positivegrowth37mesophilic

culture pH

  • @ref: 31160
  • ability: positive
  • type: optimum
  • pH: 4
  • PH range: acidophile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
20999microaerophile
31160facultative anaerobe
62928microaerophile
67771microaerophile

spore formation

@refspore formationconfidence
31160no
67771no
69481no100
69480no99.992

halophily

  • @ref: 31160
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3116017057cellobiose+carbon source
3116028757fructose+carbon source
3116028260galactose+carbon source
3116017234glucose+carbon source
3116017716lactose+carbon source
3116017306maltose+carbon source
3116029864mannitol+carbon source
3116037684mannose+carbon source
3116028053melibiose+carbon source
31160506227N-acetylglucosamine+carbon source
3116033942ribose+carbon source
3116017814salicin+carbon source
3116030911sorbitol+carbon source
3116017992sucrose+carbon source
3116027082trehalose+carbon source
311604853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose+builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol+builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose+builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
20999----------+++++---++--+-+++++++++-+----++---------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
67771From traditional pickleHeilongjiang provinceChinaCHNAsia
20999traditional pickleHeilongjiang provinceChinaCHNAsia
62928PickleHeilongjiang provinceChinaCHNAsia2010-06-01
121168Korean pickle, Japanese pickle, Chinese pickleHeilongjiang Province, ChinaChinaCHNAsia2012-01-02

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Vegetable (incl. Grains)
#Engineered#Food production#Fermented

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
209991Risk group (German classification)
1211681Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20999
  • description: Lactobacillus mudanjiangensis partial 16S rRNA gene, type strain 11050T
  • accession: HF679037
  • length: 1454
  • database: ena
  • NCBI tax ID: 1296538

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactiplantibacillus mudanjiangensis 11050GCA_005405385contigncbi1296538
66792Lactobacillus mudanjiangensis strain 110501296538.5wgspatric1296538

GC content

  • @ref: 20999
  • GC-content: 45.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno95.368yes
gram-positiveyes95.114no
anaerobicno93.964yes
aerobicno97.697yes
halophileyes88.775yes
spore-formingno92.404yes
thermophileno99.778no
glucose-utilyes93.025yes
flagellatedno97.582no
glucose-fermentyes82.606no

External links

@ref: 20999

culture collection no.: DSM 28402, CCUG 62991, LMG 27194, KCTC 21026, CIP 110706

straininfo link

  • @ref: 88097
  • straininfo: 381254

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23950151Lactobacillus mudanjiangensis sp. nov., Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough.Gu CT, Li CY, Yang LJ, Huo GCInt J Syst Evol Microbiol10.1099/ijs.0.054296-02013Bacterial Typing Techniques, Base Composition, Bread/microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vegetables/microbiologyBiotechnology
Phylogeny31368886Comparative genome analysis of Lactobacillus mudanjiangensis, an understudied member of the Lactobacillus plantarum group.Wuyts S, Allonsius CN, Wittouck S, Thys S, Lievens B, Weckx S, De Vuyst L, Sarah LMicrob Genom10.1099/mgen.0.0002862019Bacterial Proteins/genetics, Cellulase/genetics, Cellulose/metabolism, Conjugation, Genetic, *Genome, Bacterial, Lactobacillus/classification/*genetics/isolation & purification, Lactobacillus plantarum/classification/*genetics, Microscopy, Electron, Scanning, Phylogeny, Whole Genome SequencingGenetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20999Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28402Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28402)
31160Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172748828776041
41599Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30513
62928Curators of the CCUGhttps://www.ccug.se/strain?id=62991Culture Collection University of Gothenburg (CCUG) (CCUG 62991)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88097Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID381254.1
121168Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110706Collection of Institut Pasteur (CIP 110706)