Strain identifier

BacDive ID: 24108

Type strain: No

Species: Arsenicicoccus dermatophilus

Strain Designation: KM 1/12

Strain history: <- V. Perreten, Univ. Berne, Inst. of Vet. Bacteriology, Switzerland; KM 1/12 <- A. Thomann

NCBI tax ID(s): 1076331 (species)

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General

@ref: 20315

BacDive-ID: 24108

DSM-Number: 25572

keywords: Bacteria, mesophilic, animal pathogen

description: Arsenicicoccus dermatophilus KM 1/12 is a mesophilic animal pathogen that was isolated from foot skin of greater flamingo Phoenicopterus roseus with pododermatitis.

NCBI tax id

  • NCBI tax id: 1076331
  • Matching level: species

strain history

  • @ref: 20315
  • history: <- V. Perreten, Univ. Berne, Inst. of Vet. Bacteriology, Switzerland; KM 1/12 <- A. Thomann

doi: 10.13145/bacdive24108.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Dermatophilaceae
  • genus: Arsenicicoccus
  • species: Arsenicicoccus dermatophilus
  • full scientific name: Arsenicicoccus dermatophilus Gobeli et al. 2013

@ref: 20315

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dermatophilaceae

genus: Arsenicicoccus

species: Arsenicicoccus dermatophilus

full scientific name: Arsenicicoccus dermatophilus Gobeli et al. 2013

strain designation: KM 1/12

type strain: no

Culture and growth conditions

culture medium

  • @ref: 20315
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 20315
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    65623C14:02.214
    65623C16:06.316
    65623C18:03.518
    65623C14:0 ISO1.713.618
    65623C15:0 ANTEISO1.514.711
    65623C15:0 ISO32.114.621
    65623C16:0 iso9.215.626
    65623C16:1 ω7c13.915.819
    65623C17:0 anteiso1.316.722
    65623C17:0 iso3.216.629
    65623C17:1 ω8c2.916.792
    65623C17:1 ω9c ISO2.516.416
    65623C18:1 ω9c17.117.769
    65623C18:2 ω6,9c/C18:0 ANTE2.617.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
65623+--+----+-+-+-----+-+

Isolation, sampling and environmental information

isolation

  • @ref: 20315
  • sample type: foot skin of greater flamingo Phoenicopterus roseus with pododermatitis
  • host species: Phoenicopterus roseus
  • geographic location: Basel
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body-Site#Limb#Foot
#Host Body-Site#Organ#Skin, Nail, Hair

Safety information

risk assessment

  • @ref: 20315
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 20315

culture collection no.: DSM 25572, CCOS 691, CCUG 62182

straininfo link

  • @ref: 88068
  • straininfo: 402629

literature

  • topic: Phylogeny
  • Pubmed-ID: 23728373
  • title: Arsenicicoccus dermatophilus sp. nov., a hypha-forming bacterium isolated from the skin of greater flamingos (Phoenicopterus roseus) with pododermatitis.
  • authors: Gobeli S, Thomann A, Wyss F, Kuehni-Boghenbor K, Brodard I, Perreten V
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.048546-0
  • year: 2013
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Animals, Zoo/microbiology, Bacterial Typing Techniques, Base Composition, Bird Diseases/*microbiology, Birds/*microbiology, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Skin/*microbiology, Skin Diseases, Bacterial/microbiology/*veterinary, Switzerland, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20315Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25572Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25572)
65623Curators of the CCUGhttps://www.ccug.se/strain?id=62182Culture Collection University of Gothenburg (CCUG) (CCUG 62182)
68379Automatically annotated from API Coryne
88068Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402629.1