Strain identifier
BacDive ID: 24108
Type strain:
Species: Arsenicicoccus dermatophilus
Strain Designation: KM 1/12
Strain history: <- V. Perreten, Univ. Berne, Inst. of Vet. Bacteriology, Switzerland; KM 1/12 <- A. Thomann
NCBI tax ID(s): 1076331 (species)
General
@ref: 20315
BacDive-ID: 24108
DSM-Number: 25572
keywords: Bacteria, mesophilic, animal pathogen
description: Arsenicicoccus dermatophilus KM 1/12 is a mesophilic animal pathogen that was isolated from foot skin of greater flamingo Phoenicopterus roseus with pododermatitis.
NCBI tax id
- NCBI tax id: 1076331
- Matching level: species
strain history
- @ref: 20315
- history: <- V. Perreten, Univ. Berne, Inst. of Vet. Bacteriology, Switzerland; KM 1/12 <- A. Thomann
doi: 10.13145/bacdive24108.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Dermatophilaceae
- genus: Arsenicicoccus
- species: Arsenicicoccus dermatophilus
- full scientific name: Arsenicicoccus dermatophilus Gobeli et al. 2013
@ref: 20315
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dermatophilaceae
genus: Arsenicicoccus
species: Arsenicicoccus dermatophilus
full scientific name: Arsenicicoccus dermatophilus Gobeli et al. 2013
strain designation: KM 1/12
type strain: no
Culture and growth conditions
culture medium
- @ref: 20315
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
- @ref: 20315
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | + | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | catalase | + | 1.11.1.6 |
68379 | gelatinase | + | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 65623 C14:0 2.2 14 65623 C16:0 6.3 16 65623 C18:0 3.5 18 65623 C14:0 ISO 1.7 13.618 65623 C15:0 ANTEISO 1.5 14.711 65623 C15:0 ISO 32.1 14.621 65623 C16:0 iso 9.2 15.626 65623 C16:1 ω7c 13.9 15.819 65623 C17:0 anteiso 1.3 16.722 65623 C17:0 iso 3.2 16.629 65623 C17:1 ω8c 2.9 16.792 65623 C17:1 ω9c ISO 2.5 16.416 65623 C18:1 ω9c 17.1 17.769 65623 C18:2 ω6,9c/C18:0 ANTE 2.6 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
65623 | + | - | - | + | - | - | - | - | + | - | + | - | + | - | - | - | - | - | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 20315
- sample type: foot skin of greater flamingo Phoenicopterus roseus with pododermatitis
- host species: Phoenicopterus roseus
- geographic location: Basel
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Birds | |
#Host Body-Site | #Limb | #Foot |
#Host Body-Site | #Organ | #Skin, Nail, Hair |
Safety information
risk assessment
- @ref: 20315
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
External links
@ref: 20315
culture collection no.: DSM 25572, CCOS 691, CCUG 62182
straininfo link
- @ref: 88068
- straininfo: 402629
literature
- topic: Phylogeny
- Pubmed-ID: 23728373
- title: Arsenicicoccus dermatophilus sp. nov., a hypha-forming bacterium isolated from the skin of greater flamingos (Phoenicopterus roseus) with pododermatitis.
- authors: Gobeli S, Thomann A, Wyss F, Kuehni-Boghenbor K, Brodard I, Perreten V
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.048546-0
- year: 2013
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Animals, Zoo/microbiology, Bacterial Typing Techniques, Base Composition, Bird Diseases/*microbiology, Birds/*microbiology, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Skin/*microbiology, Skin Diseases, Bacterial/microbiology/*veterinary, Switzerland, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20315 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25572 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25572) | |
65623 | Curators of the CCUG | https://www.ccug.se/strain?id=62182 | Culture Collection University of Gothenburg (CCUG) (CCUG 62182) | |
68379 | Automatically annotated from API Coryne | |||
88068 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402629.1 |