Strain identifier
BacDive ID: 24086
Type strain: 
Species: Halarchaeum solikamskense
Strain Designation: RS94
Strain history: <- B. Kuznetsov, Russian Academy of Sciences, Centre Bioeng., Moscow; RS94 <- A.I. Saralov, IEGM
NCBI tax ID(s): 1073081 (species)
version 9 (current version)
General
@ref: 21213
BacDive-ID: 24086
DSM-Number: 26612
keywords: genome sequence, 16S sequence, Archaea
description: Halarchaeum solikamskense RS94 is an archaeon that was isolated from foamy products of flotation enrichment of potassium minerals.
NCBI tax id
- NCBI tax id: 1073081
- Matching level: species
strain history
- @ref: 21213
- history: <- B. Kuznetsov, Russian Academy of Sciences, Centre Bioeng., Moscow; RS94 <- A.I. Saralov, IEGM
doi: 10.13145/bacdive24086.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halarchaeum
- species: Halarchaeum solikamskense
- full scientific name: Halarchaeum solikamskense Saralov et al. 2014
@ref: 21213
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halarchaeum
species: Halarchaeum solikamskense
full scientific name: Halarchaeum solikamskense Saralov et al. 2014
strain designation: RS94
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21213
- name: HALARCHAEUM MEDIUM RS94 (DSMZ Medium 1483)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1483
- composition: Name: HALARCHAEUM MEDIUM RS94 (DSMZ Medium 1483) Composition: NaCl 200.0 g/l MgCl2 x 6 H2O 25.0 g/l Agar 20.0 g/l K2SO4 5.0 g/l Na pyruvate 2.0 g/l Casein hydrolysate 2.0 g/l Yeast extract 1.0 g/l Na acetate 0.5 g/l Na malate 0.5 g/l Tryptone 0.5 g/l Glucose 0.5 g/l Na2HPO4 x 12 H2O 0.4 g/l NaH2PO4 x 2 H2O 0.2 g/l CaCl2 x 2 H2O 0.1 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.0022 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l CuCl2 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l H3BO3 3e-05 g/l NiCl2 x 6 H2O 3e-05 g/l Distilled water
culture temp
- @ref: 21213
- growth: positive
- type: growth
- temperature: 35-50
Isolation, sampling and environmental information
isolation
- @ref: 21213
- sample type: foamy products of flotation enrichment of potassium minerals
- geographic location: Ural region, Solikamsk
- country: Russia
- origin.country: RUS
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Industrial production |
| #Environmental | #Aquatic | #Foam |
| #Environmental | #Terrestrial | #Geologic |
Safety information
risk assessment
- @ref: 21213
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 21213 | Haloarchaeum solikamskense strain RS94 16S ribosomal RNA gene, partial sequence | JN227878 | 1448 | nuccore | 1073081 |
| 124043 | Halarchaeum solikamskense gene for 16S ribosomal RNA, partial sequence, strain: DSM 26612. | LC055785 | 1475 | nuccore | 1073081 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halarchaeum solikamskense DSM 26612 | GCA_017874695 | contig | ncbi | 1073081 |
| 66792 | Halarchaeum solikamskense DSM 26612 | 2913477690 | draft | img | 1073081 |
GC content
- @ref: 21213
- GC-content: 66.4
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 21213
culture collection no.: DSM 26612, VKPM B-11282
straininfo link
- @ref: 88051
- straininfo: 396932
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21213 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26612 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26612) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 88051 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396932.1 | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |