Strain identifier
BacDive ID: 24020
Type strain: 
Species: Flavobacterium columnare
Strain Designation: ALG-00-530
Strain history: <- C. Arias, Auburn University, USA; ALG-00-530
NCBI tax ID(s): 996 (species)
version 9 (current version)
General
@ref: 20520
BacDive-ID: 24020
DSM-Number: 25092
keywords: Bacteria, animal pathogen
description: Flavobacterium columnare ALG-00-530 is an animal pathogen that was isolated from channel catfish.
NCBI tax id
- NCBI tax id: 996
- Matching level: species
strain history
- @ref: 20520
- history: <- C. Arias, Auburn University, USA; ALG-00-530
doi: 10.13145/bacdive24020.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium columnare
- full scientific name: Flavobacterium columnare (Bernardet and Grimont 1989 ex Davis 1922) Bernardet et al. 1996
synonyms
@ref synonym 20215 Cytophaga columnaris 20215 Flexibacter columnaris
@ref: 20520
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium columnare
full scientific name: Flavobacterium columnare (Bernardet and Grimont 1989) Bernardet et al. 1996
strain designation: ALG-00-530
type strain: no
Culture and growth conditions
culture medium
- @ref: 20520
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 20520
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 20520
- sample type: channel catfish
- geographic location: Alabama
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
Safety information
risk assessment
- @ref: 20520
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 20520
culture collection no.: DSM 25092, CECT 7586
straininfo link
- @ref: 87994
- straininfo: 371227
literature
| Pubmed-ID | title | authors | journal | DOI | year | mesh | topic | topic2 |
|---|---|---|---|---|---|---|---|---|
| 17050050 | Immunization of eyed channel catfish, Ictalurus punctatus, eggs with monovalent Flavobacterium columnare vaccine and bivalent F. columnare and Edwardsiella ictaluri vaccine. | Shoemaker CA, Klesius PH, Evans JJ | Vaccine | 10.1016/j.vaccine.2006.09.055 | 2006 | Animals, Bacterial Vaccines/immunology/*therapeutic use, Edwardsiella ictaluri/*immunology, Fish Diseases/immunology/*prevention & control, Flavobacteriaceae Infections/immunology/microbiology/prevention & control/*veterinary, Flavobacterium/*immunology, Ictaluridae/*immunology, Ovum/*immunology, Vaccines, Combined/therapeutic use | ||
| 17169112 | Comparison of lipopolysaccharide and protein profiles between Flavobacterium columnare strains from different genomovars. | Zhang Y, Arias CR, Shoemaker CA, Klesius PH | J Fish Dis | 10.1111/j.1365-2761.2006.00760.x | 2006 | Animals, Antibodies, Bacterial/biosynthesis/metabolism, Bacterial Proteins/*analysis/metabolism, Blotting, Western, Cluster Analysis, Electrophoresis, Polyacrylamide Gel, Enzyme-Linked Immunosorbent Assay, Fish Diseases/*microbiology, Flavobacteriaceae Infections/microbiology/*veterinary, Flavobacterium/*chemistry/classification/genetics/pathogenicity, Lipopolysaccharides/*analysis, Polymorphism, Genetic, Random Allocation, Virulence | Metabolism | Enzymology |
| 17964085 | Flavobacterium columnare genomovar influences mortality in channel catfish (Ictalurus punctatus). | Shoemaker CA, Olivares-Fuster O, Arias CR, Klesius PH | Vet Microbiol | 10.1016/j.vetmic.2007.09.003 | 2007 | Animals, *Aquaculture, Bacterial Adhesion, Fish Diseases/microbiology/*mortality, Flavobacteriaceae Infections/microbiology/mortality/*veterinary, Flavobacterium/genetics/*pathogenicity/physiology, Ictaluridae/*microbiology, Polymorphism, Single-Stranded Conformational, Virulence/genetics | ||
| 29893005 | Influence of native catfish mucus on Flavobacterium columnare growth and proteolytic activity. | Shoemaker CA, LaFrentz BR, Peatman E, Beck BH | J Fish Dis | 10.1111/jfd.12833 | 2018 | Animals, Catfishes/metabolism/*microbiology, Culture Media/chemistry/pharmacology, Fish Diseases/microbiology/mortality, Flavobacteriaceae Infections/microbiology/mortality, Flavobacterium/drug effects/*enzymology/*growth & development/pathogenicity, Galactose/metabolism, Gills/microbiology, Glycosylation, Lectins/metabolism, Mucus/chemistry/*metabolism, Peptide Hydrolases/biosynthesis/*metabolism, Proteolysis, Virulence | Metabolism | Cultivation |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20520 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25092 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25092) | |
| 87994 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID371227.1 |