Strain identifier
BacDive ID: 23870
Type strain: 
Species: Ramlibacter ginsenosidimutans
Strain Designation: BXN5-27
Strain history: <- S.-T. Lee et al., College of Bio & Food Technology, Dalian Polytechnic University, P.R. China
NCBI tax ID(s): 502333 (species)
version 8.1 (current version)
General
@ref: 20759
BacDive-ID: 23870
DSM-Number: 23480
keywords: 16S sequence, Bacteria, mesophilic
description: Ramlibacter ginsenosidimutans BXN5-27 is a mesophilic bacterium that was isolated from soil of a ginseng field.
NCBI tax id
- NCBI tax id: 502333
- Matching level: species
strain history
- @ref: 20759
- history: <- S.-T. Lee et al., College of Bio & Food Technology, Dalian Polytechnic University, P.R. China
doi: 10.13145/bacdive23870.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Ramlibacter
- species: Ramlibacter ginsenosidimutans
- full scientific name: Ramlibacter ginsenosidimutans Wang et al. 2014
@ref: 20759
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Ramlibacter
species: Ramlibacter ginsenosidimutans
full scientific name: Ramlibacter ginsenosidimutans Wang et al. 2014
strain designation: BXN5-27
type strain: yes
Culture and growth conditions
culture medium
- @ref: 20759
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 20759
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20759
- sample type: soil of a ginseng field
- geographic location: Baekdu Mountain
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_66949.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_5619;97_6770;98_18346;99_66949&stattab=map
- Last taxonomy: Ramlibacter ginsenosidimutans subclade
- 16S sequence: EU423304
- Sequence Identity:
- Total samples: 38
- soil counts: 20
- aquatic counts: 5
- animal counts: 2
- plant counts: 11
Safety information
risk assessment
- @ref: 20759
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20759
- description: Ramlibacter ginsenosidimutans strain BXN5-27 16S ribosomal RNA gene, partial sequence
- accession: EU423304
- length: 1465
- database: ena
- NCBI tax ID: 502333
GC content
- @ref: 20759
- GC-content: 68.1
- method: high performance liquid chromatography (HPLC)
External links
@ref: 20759
culture collection no.: DSM 23480, DSM 21137, KCTC 22276, LMG 24525
straininfo link
- @ref: 87882
- straininfo: 391108
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22450785 | Ramlibacter ginsenosidimutans sp. nov., with ginsenoside-converting activity. | Wang L, An DS, Kim SG, Jin FX, Kim SC, Lee ST, Im WT | J Microbiol Biotechnol | 10.4014/jmb.1106.06041 | 2012 | Biotransformation, China, Comamonadaceae/genetics/*isolation & purification/*metabolism, Ginsenosides/*metabolism, Molecular Sequence Data, Panax/growth & development/microbiology, Phylogeny, *Soil Microbiology | Metabolism |
| Phylogeny | 28920850 | Ramlibacter alkalitolerans sp. nov., alkali-tolerant bacterium isolated from soil of ginseng. | Lee DH, Cha CJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002342 | 2017 | Alkalies, Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Panax/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 28950933 | Ramlibacter monticola sp. nov., isolated from forest soil. | Chaudhary DK, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002314 | 2017 | Bacterial Typing Techniques, Base Composition, Comamonadaceae/classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 34319259 | Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil. | Khan SA, Kim HM, Baek JH, Jung HS, Jeon CO | J Microbiol Biotechnol | 10.4014/jmb.2105.05023 | 2021 | Base Composition, Comamonadaceae/chemistry/*classification/cytology/*physiology, DNA, Bacterial/genetics, Fatty Acids, Genome, Bacterial/genetics, Nucleic Acid Hybridization, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Ubiquinone | Genetics |
| Phylogeny | 35305190 | Genome mining revealed polyhydroxybutyrate biosynthesis by Ramlibacter agri sp. nov., isolated from agriculture soil in Korea. | Dahal RH, Kim J, Chaudhary DK, Le TTN, Kim DU, Jang H, Kim J | Antonie Van Leeuwenhoek | 10.1007/s10482-022-01721-z | 2022 | Agriculture, Bacterial Typing Techniques, *Comamonadaceae, DNA, Bacterial/genetics, Fatty Acids, Humans, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, Soil Microbiology | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20759 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23480 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23480) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 87882 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391108.1 |