Strain identifier
BacDive ID: 23867
Type strain: 
Species: Thalassotalea piscium
Strain Designation: T202
Strain history: X.-H. Zhang and Y. Zhang T202.
NCBI tax ID(s): 1230533 (species)
version 8.1 (current version)
General
@ref: 21324
BacDive-ID: 23867
DSM-Number: 26287
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Thalassotalea piscium T202 is a mesophilic, motile bacterium that was isolated from gill of a cultured flounder .
NCBI tax id
- NCBI tax id: 1230533
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21324 | <- X.-H. Zhang, Ocean Univ. China, Dept. of Marine Biology, Qingdao, P. R. China; T202 <- K. Tang |
| 67770 | X.-H. Zhang and Y. Zhang T202. |
doi: 10.13145/bacdive23867.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Colwelliaceae
- genus: Thalassotalea
- species: Thalassotalea piscium
- full scientific name: Thalassotalea piscium Zhang et al. 2014
@ref: 21324
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Colwelliaceae
genus: Thalassotalea
species: Thalassotalea piscium
full scientific name: Thalassotalea piscium Zhang et al. 2014
strain designation: T202
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.808 | |
| 69480 | 99.966 | negative |
Culture and growth conditions
culture medium
- @ref: 21324
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21324 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.993 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 21324 | gill of a cultured flounder (Paralichthys olivaceus) | Paralichthys olivaceus | Shandong Province | China | CHN | Asia |
| 67770 | Gill of a cultured flounder (Paralichthys olivaceus) in Shandong Province | Paralichthys olivaceus | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Aquaculture |
| #Host | #Fishes | |
| #Host Body-Site | #Organ | #Vascular system |
taxonmaps
- @ref: 69479
- File name: preview.99_85041.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_82;96_13448;97_16372;98_58919;99_85041&stattab=map
- Last taxonomy: Thalassotalea piscium subclade
- 16S sequence: JX412957
- Sequence Identity:
- Total samples: 870
- soil counts: 8
- aquatic counts: 835
- animal counts: 26
- plant counts: 1
Safety information
risk assessment
- @ref: 21324
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21324
- description: Thalassotalea piscium strain T202 16S ribosomal RNA gene, partial sequence
- accession: JX412957
- length: 1505
- database: ena
- NCBI tax ID: 1230533
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thalassotalea piscium DSM 26287 | GCA_014207645 | scaffold | ncbi | 1230533 |
| 66792 | Thalassotalea piscium strain DSM 26287 | 1230533.4 | wgs | patric | 1230533 |
| 66792 | Thalassotalea piscium DSM 26287 | 2861639327 | draft | img | 1230533 |
GC content
- @ref: 21324
- GC-content: 37
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | yes | 82.733 | no |
| gram-positive | no | 98.793 | no |
| anaerobic | no | 98.895 | no |
| aerobic | yes | 80.208 | no |
| halophile | no | 55.352 | no |
| spore-forming | no | 95.963 | no |
| glucose-util | yes | 87.54 | no |
| thermophile | no | 99.677 | yes |
| motile | yes | 89.066 | no |
| glucose-ferment | no | 84.211 | no |
External links
@ref: 21324
culture collection no.: DSM 26287, JCM 18590, KCTC 32144
straininfo link
- @ref: 87879
- straininfo: 404281
literature
- topic: Phylogeny
- Pubmed-ID: 24421274
- title: Description of Thalassotalea piscium gen. nov., sp. nov., isolated from flounder (Paralichthys olivaceus), reclassification of four species of the genus Thalassomonas as members of the genus Thalassotalea gen. nov. and emended description of the genus Thalassomonas.
- authors: Zhang Y, Tang K, Shi X, Zhang XH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.055913-0
- year: 2014
- mesh: Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flounder/*microbiology, Gammaproteobacteria/*classification/genetics/isolation & purification, Gills/microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21324 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26287 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26287) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 87879 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404281.1 |