Strain identifier
BacDive ID: 23842
Type strain: 
Species: Chlamydophila caviae
Strain Designation: 03DC25, GPIC
Strain history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; GPIC <- D. Vanrompay, Univ. Ghent, Belgium <- P. Bavoil, Univ. of Maryland, USA <- E. Murray, Harvard Univ., Dept. Microbiol.; GPIC
NCBI tax ID(s): 83557 (species)
version 9.1 (current version)
General
@ref: 21080
BacDive-ID: 23842
DSM-Number: 19441
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, animal pathogen
description: Chlamydophila caviae 03DC25 is a Gram-negative animal pathogen that was isolated from Guinea pig conjunctivitis.
NCBI tax id
- NCBI tax id: 83557
- Matching level: species
strain history
- @ref: 21080
- history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; GPIC <- D. Vanrompay, Univ. Ghent, Belgium <- P. Bavoil, Univ. of Maryland, USA <- E. Murray, Harvard Univ., Dept. Microbiol.; GPIC
doi: 10.13145/bacdive23842.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlamydiota
- domain: Bacteria
- phylum: Chlamydiota
- class: Chlamydiia
- order: Chlamydiales
- family: Chlamydiaceae
- genus: Chlamydophila
- species: Chlamydophila caviae
- full scientific name: Chlamydophila caviae Everett et al. 1999
synonyms
- @ref: 20215
- synonym: Chlamydia caviae
@ref: 21080
domain: Bacteria
phylum: Chlamydiae
class: Chlamydiia
order: Chlamydiales
family: Chlamydiaceae
genus: Chlamydia
species: Chlamydia caviae
full scientific name: Chlamydia caviae (Everett et al. 1999) Sachse et al. 2015
strain designation: 03DC25, GPIC
type strain: yes
Morphology
colony morphology
- @ref: 21080
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 21080
- name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1193
- composition: Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium
culture temp
- @ref: 21080
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 95.349
Isolation, sampling and environmental information
isolation
- @ref: 21080
- sample type: Guinea pig conjunctivitis
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Inflammation | |
| #Host | #Mammals | #Rodentia (Other) |
taxonmaps
- @ref: 69479
- File name: preview.99_242.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_62;96_169;97_182;98_205;99_242&stattab=map
- Last taxonomy: Chlamydia
- 16S sequence: D85708
- Sequence Identity:
- Total samples: 897
- soil counts: 52
- aquatic counts: 98
- animal counts: 740
- plant counts: 7
Safety information
risk assessment
- @ref: 21080
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21080
- description: Chlamydophila caviae gene for 16S ribosomal RNA, strain: Gp/Ic (= ATCC VR813)
- accession: D85708
- length: 1548
- database: nuccore
- NCBI tax ID: 83557
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chlamydophila caviae GPIC | 227941.17 | plasmid | patric | 227941 |
| 66792 | Chlamydophila caviae GPIC | 227941.6 | complete | patric | 227941 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 84.062 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 65.273 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 95.349 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 81.079 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.86 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 73.908 | no |
External links
@ref: 21080
culture collection no.: DSM 19441, ATCC VR-813
straininfo link
- @ref: 87864
- straininfo: 407259
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21080 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19441 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19441) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 87864 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407259.1 |