Name: Chlamydophila caviae 03DC25
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23842

Type strain:

Species: Chlamydophila caviae

Strain Designation: 03DC25, GPIC

Culture col. no.: DSM 19441, ATCC VR-813

Strain history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; GPIC <- D. Vanrompay, Univ. Ghent, Belgium <- P. Bavoil, Univ. of Maryland, USA <- E. Murray, Harvard Univ., Dept. Microbiol.; GPIC

NCBI tax ID(s): 83557 (species)

SI-ID 407259

DSM 19441

Section

Chlamydophila caviae 03DC25 is a mesophilic animal pathogen that was isolated from Guinea pig conjunctivitis.

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chlamydiota*
	Class	*Chlamydiia*
	Order	*Chlamydiales*
	Family	*Chlamydiaceae*
	Genus	Chlamydophila
	Species	Chlamydophila caviae
	Full Scientific Name (LPSN)	Chlamydophila caviae Everett et al. 1999

Synonym

"Chlamydia caviae"

Information on morphological and physiological properties Morphology

[Ref.: #21080]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21080]

Culture medium

CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)

[Ref.: #21080]

Culture medium growth

[Ref.: #21080]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21080]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21080]			growth	37 °C

[Ref.: #21080]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21080]	Sample type/isolated from	Guinea pig conjunctivitis
[Ref.: #21080]	Country	USA
[Ref.: #21080]	Country ISO 3 Code	USA
[Ref.: #21080]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Host	#Mammals	#Rodentia (Other)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D85708 (>99% sequence identity) for Chlamydia from Microbeatlas

Aquatic Samples	98
Soil Samples	52
Animal Samples	740
Plant Samples	7
Total Samples	897

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21080]	Pathogenicity (animal)	yes
[Ref.: #21080]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21080]	Chlamydophila caviae gene for 16S ribosomal RNA, strain: Gp/Ic (= ATCC VR813)	D85708	1548	ENA	83557 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chlamydophila caviae GPIC	227941.17	plasmid	PATRIC	227941 tax ID	*
[Ref.: #66792]	Chlamydophila caviae GPIC	227941.6	complete	PATRIC	227941 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chlamydophila caviae GPIC PATRIC: 227941.6
[Ref.: #69480]	motile	no	68.208	no
[Ref.: #69480]	gram-positive	no	96.579	no
[Ref.: #69480]	anaerobic	no	65.427	no
[Ref.: #69480]	aerobic	no	91.889	no
[Ref.: #69480]	halophile	yes	60.727	no
[Ref.: #69480]	spore-forming	no	97.469	no
[Ref.: #69480]	glucose-util	yes	78.823	no
[Ref.: #69480]	flagellated	no	96.48	no
[Ref.: #69480]	thermophile	no	77.049	yes
[Ref.: #69480]	glucose-ferment	no	50.517	no

Availability in culture collections External links

[Ref.: #21080]

Culture collection no.

DSM 19441, ATCC VR-813

[Ref.: #87864]

SI-ID 407259

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21080

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19441

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87864

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407259.1 )

* These data were automatically processed and therefore are not curated

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Search for species Chlamydia caviae in external resources:
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Chlamydophila caviae GPIC

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