Name: Chlamydophila caviae 03DC25
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23842

Type strain:

Species: Chlamydophila caviae

Strain Designation: 03DC25, GPIC

Culture col. no.: DSM 19441, ATCC VR-813

Strain history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; GPIC <- D. Vanrompay, Univ. Ghent, Belgium <- P. Bavoil, Univ. of Maryland, USA <- E. Murray, Harvard Univ., Dept. Microbiol.; GPIC

NCBI tax ID(s): 83557 (species)

SI-ID 407259

DSM 19441

Special Collections

DSMZ

Section

Chlamydophila caviae 03DC25 is a Gram-negative animal pathogen that was isolated from Guinea pig conjunctivitis.

Gram-negative
animal pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chlamydiota*
	Class	*Chlamydiia*
	Order	*Chlamydiales*
	Family	*Chlamydiaceae*
	Genus	Chlamydophila
	Species	Chlamydophila caviae
	Full Scientific Name (LPSN)	Chlamydophila caviae Everett et al. 1999

Synonym

"Chlamydia caviae"

Information on morphological and physiological properties Morphology

[Ref.: #21080]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21080]

Culture medium

CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)

[Ref.: #21080]

Culture medium growth

[Ref.: #21080]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21080]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21080]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %95.349

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21080]	Sample type/isolated from	Guinea pig conjunctivitis
[Ref.: #21080]	Country	USA
[Ref.: #21080]	Country ISO 3 Code	USA
[Ref.: #21080]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Host	#Mammals	#Rodentia (Other)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D85708 (>99% sequence identity) for Chlamydia from Microbeatlas

Aquatic Samples	98
Soil Samples	52
Animal Samples	740
Plant Samples	7
Total Samples	897

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21080]	Pathogenicity (animal)	yes
[Ref.: #21080]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21080]	Chlamydophila caviae gene for 16S ribosomal RNA, strain: Gp/Ic (= ATCC VR813)	D85708	1548	GenBank ENA	83557 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chlamydophila caviae GPIC	227941.17	plasmid	PATRIC	227941 tax ID	*
[Ref.: #66792]	Chlamydophila caviae GPIC	227941.6	complete	PATRIC	227941 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chlamydophila caviae GPIC PATRIC: 227941.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	84.062	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	65.273	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	95.349	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	81.079	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.86	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	73.908	no

Availability in culture collections External links

[Ref.: #21080]

Culture collection no.

DSM 19441, ATCC VR-813

[Ref.: #87864]

SI-ID 407259

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21080

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19441

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87864

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407259.1 )

* These data were automatically processed and therefore are not curated

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Chlamydophila caviae GPIC

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